The IntFOLD Server Results Page (Version 7.0)
Please cite the relevant paper:McGuffin, L. J., Edmunds N. S., Genc, A. G., Alharbi, S. M. A., Salehe, B. R. and Adiyaman, R. (2023) Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers. Nucleic Acids Research. gkad297. DOI PubMed
Links to graphical output:
- Top 5 3D models
- Disorder prediction
- Domain boundary prediction
- Binding site prediction
- Full model quality assessment results
Download machine readable results in CASP format:
- TS (Tertiary Structure Prediction)
- DR (Disorder Prediction)
- DP (Domain Prediction)
- FN (Binding Site Prediction)
- QA (Model Quality Prediction)
- Make a compressed file containing all generated 3D models (models are in PDB format with predicted per-residue errors in the B-factor column)
Results will be available for 21 days after job completion (subject to server capacity)
Tertiary Structure Predictions: Top 5 multi-template 3D models for T1114s2 | Help | ||||
Model ID and PDBsum links for all templates used | Confidence and P-value | Global model quality score | Local model quality plot (click images to download plots) | 3D map of model quality |
IntFOLD7 AF2 TS5 1 0 rel |
CERT: 7.934E-5 |
0.6935 |
|
|
IntFOLD7 AF2 TS3 4 0 rel |
CERT: 9.976E-5 |
0.6813 |
|
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IntFOLD7 AF2 TS4 2 0 rel |
CERT: 1.057E-4 |
0.6783 |
|
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IntFOLD7 AF2 TS2 3 0 rel |
CERT: 1.174E-4 |
0.6727 |
|
|
IntFOLD7 AF2 TS5 1 0 |
CERT: 1.214E-4 |
0.6709 |
|
McGuffin, L. J. (2008) Intrinsic disorder prediction from the analysis of multiple protein fold recognition models. Bioinformatics, 24, 1789-1804. PubMed
Disorder prediction for T1114s2 | Help | |||
Click image to download plot in PostScript format. |
Domain boundary prediction for T1114s2 | Help | |||
Click image to download model or view prediction using Jmol. The model above is coloured according to the predicted domains. |
Roche, D. B., Buenavista, M. T., McGuffin, L. J. (2013) The FunFOLD2 server for the prediction of protein-ligand interactions. Nucleic Acids Res., 41, W303-7. PubMed
Ligand binding residues prediction for T1114s2 | Help | |||
Click image to download model or view prediction using Jmol. Predicted ligand binding residues are shown as blue sticks in the image above. |
McGuffin, L.J., Aldowsari, F., Alharbi, S. and Adiyaman, R. (2021) ModFOLD8: accurate global and local quality estimates for 3D protein models. Nucleic Acids Research, 49, W425-W430. DOI PubMed
Full model quality assessment results for T1114s2 | Help | ||||
Model ID and PDBsum links for all templates used | Confidence and P-value | Global model quality score | Local model quality plot (click images to download plots) | 3D map of model quality |
IntFOLD7 AF2 TS5 1 0 rel |
CERT: 7.934E-5 |
0.6935 |
|
|
IntFOLD7 AF2 TS3 4 0 rel |
CERT: 9.976E-5 |
0.6813 |
|
|
IntFOLD7 AF2 TS4 2 0 rel |
CERT: 1.057E-4 |
0.6783 |
|
|
IntFOLD7 AF2 TS2 3 0 rel |
CERT: 1.174E-4 |
0.6727 |
|
|
IntFOLD7 AF2 TS5 1 0 |
CERT: 1.214E-4 |
0.6709 |
|
|
IntFOLD7 AF2 TS1 5 0 rel |
CERT: 1.24E-4 |
0.6698 |
|
|
IntFOLD7 AF2 TS3 4 0 |
CERT: 1.31E-4 |
0.6668 |
|
|
IntFOLD7 AF2 TS4 2 0 |
CERT: 1.475E-4 |
0.6605 |
|
|
IntFOLD7 AF2 TS2 3 0 |
CERT: 1.609E-4 |
0.6559 |
|
|
IntFOLD7 AF2 TS1 5 0 |
CERT: 1.69E-4 |
0.6533 |
|
|
IntFOLD7 Env-PPAS multi8 TS1 1ubmS 3ayxB 4gd3S 5aa5A |
HIGH: 2.406E-3 |
0.5119 |
|
|
IntFOLD7 PPAS multi8 TS1 1ubmS 3ayxB 4gd3S 5aa5A |
HIGH: 2.938E-3 |
0.5013 |
|
|
IntFOLD7 Env-PPAS multi4 TS1 1frfS 5aa5A |
HIGH: 3.022E-3 |
0.4998 |
|
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IntFOLD7 Env-PPAS multi1 TS1 1frfS 5aa5A |
HIGH: 3.022E-3 |
0.4998 |
|
|
IntFOLD7 HHpred TS1 5aa5A 4iucS 5aduS 4uqlA 5jskA 1yq9A 3myrA |
HIGH: 3.046E-3 |
0.4994 |
|
|
IntFOLD7 PPAS multi3 TS1 5aa5A 4gd3S 1ubmS 3ayxB |
HIGH: 3.122E-3 |
0.4981 |
|
|
IntFOLD7 Env-PPAS multi3 TS1 1frfS 1frvC 4gd3S 1ubmS 3ayxB |
HIGH: 3.18E-3 |
0.4971 |
|
|
IntFOLD7 dPPAS2 multi8 TS1 1ubmS 1frfS 3ayxB 4gd3S 5aa5A |
HIGH: 3.218E-3 |
0.4965 |
|
|
IntFOLD7 dPPAS multi1 TS1 5aa5A 1frfS |
HIGH: 3.328E-3 |
0.4947 |
|
|
IntFOLD7 SPARKSX multi3 TS1 5aa5A 3ayxB 1wuiS 1yq9A |
HIGH: 3.38E-3 |
0.4939 |
|
|
IntFOLD7 wPPAS multi1 TS1 5aa5A 7odgS |
HIGH: 3.492E-3 |
0.4921 |
|
|
IntFOLD7 wPPAS multi8 TS1 1ubmS 4gd3S 3ayxB 5aa5A |
HIGH: 3.506E-3 |
0.4919 |
|
|
IntFOLD7 HHpred TS2 5aa5A 4iucS 5aduS 4uqlA 5jskA 1yq9A 3myrA |
HIGH: 3.601E-3 |
0.4905 |
|
|
IntFOLD7 HHpred TS3 5aa5A 4iucS 5aduS 4uqlA 5jskA 1yq9A 3myrA |
HIGH: 3.663E-3 |
0.4896 |
|
|
IntFOLD7 LOMETS multi3 TS1 5aa5A 1frvC 1frfS 6ehqS |
HIGH: 3.72E-3 |
0.4887 |
|
|
IntFOLD7 COMA multi4 TS1 2wpnA 1wuiS 1cc1S 3myrA 5aa5A |
HIGH: 3.823E-3 |
0.4873 |
|
|
IntFOLD7 wdPPAS multi8 TS1 1ubmS 4gd3S 5aa5A |
HIGH: 3.849E-3 |
0.4869 |
|
|
IntFOLD7 dPPAS multi3 TS1 5aa5A 1frfS 1frvC 1ubmS 3ayxB |
HIGH: 3.976E-3 |
0.4852 |
|
|
IntFOLD7 tR2 TS0 2 0.15 |
HIGH: 3.986E-3 |
0.4851 |
|
|
IntFOLD7 tR2 TS0 1 0.15 |
HIGH: 4.007E-3 |
0.4848 |
|
|
IntFOLD7 wPPAS multi3 TS1 5aa5A 7odgS 1ubmS |
HIGH: 4.141E-3 |
0.4830 |
|
|
IntFOLD7 IntFOLDTS60 multi4 TS1 1yqwA 1wuiS 3myrA 1h2rS 3ayxB 3rgwS 3myrC 5aa5A 3n2wA 1e4iA |
HIGH: 4.304E-3 |
0.4810 |
|
|
IntFOLD7 dPPAS multi6 TS1 1ubmS |
HIGH: 4.342E-3 |
0.4805 |
|
|
IntFOLD7 dPPAS2 multi6 TS1 1ubmS |
HIGH: 4.342E-3 |
0.4805 |
|
|
IntFOLD7 PPAS multi1 TS1 5aa5A 4gd3S |
HIGH: 4.348E-3 |
0.4804 |
|
|
IntFOLD7 dPPAS multi8 TS1 1ubmS 3ayxB 4gd3S 5aa5A |
HIGH: 4.365E-3 |
0.4802 |
|
|
IntFOLD7 tR2 TS0 2 0.35 |
HIGH: 4.389E-3 |
0.4799 |
|
|
IntFOLD7 wPPAS multi5 TS1 1ubmS 4gd3S |
HIGH: 4.44E-3 |
0.4793 |
|
|
IntFOLD7 wMUSTER multi1 TS1 5aa5A 1frfS |
HIGH: 4.461E-3 |
0.4791 |
|
|
IntFOLD7 SPARKSX multi8 TS1 1wuiS 3ayxB 3rgwS 3myrC 5aa5A |
HIGH: 4.474E-3 |
0.4789 |
|
|
IntFOLD7 wdPPAS multi1 TS1 5aa5A 6ehqS |
HIGH: 4.479E-3 |
0.4789 |
|
|
IntFOLD7 wMUSTER multi8 TS1 1ubmS 7odgS 3ayxB 6ehqS 4gd3S 5aa5A |
HIGH: 4.569E-3 |
0.4778 |
|
|
IntFOLD7 SPARKSX multi1 TS1 5aa5A 3ayxB |
HIGH: 4.692E-3 |
0.4764 |
|
|
IntFOLD7 dPPAS2 multi4 TS1 1frvC 1frfS 5aa5A |
HIGH: 4.792E-3 |
0.4753 |
|
|
IntFOLD7 CNFsearch multi8 TS1 3rgwS 1h2aS 5aa5A 6qgrG |
HIGH: 4.855E-3 |
0.4746 |
|
|
IntFOLD7 CNFsearch multi4 TS1 3rgwS 1h2aS 5aa5A 6qgrG |
HIGH: 4.855E-3 |
0.4746 |
|
|
IntFOLD7 dPPAS2 multi5 TS1 1ubmS 1frfS |
HIGH: 4.944E-3 |
0.4736 |
|
|
IntFOLD7 PPAS multi7 TS1 1ubmS |
HIGH: 5.003E-3 |
0.4730 |
|
|
IntFOLD7 PPAS multi6 TS1 1ubmS |
HIGH: 5.003E-3 |
0.4730 |
|
|
IntFOLD7 Env-PPAS multi7 TS1 1ubmS |
HIGH: 5.003E-3 |
0.4730 |
|
|
IntFOLD7 Env-PPAS multi6 TS1 1ubmS |
HIGH: 5.003E-3 |
0.4730 |
|
|
IntFOLD7 IntFOLDTS60 multi3 TS1 1yqwA 3ayxB |
HIGH: 5.013E-3 |
0.4729 |
|
|
IntFOLD7 HHsearch multi7 TS1 1yqwA 3ayxB |
HIGH: 5.013E-3 |
0.4729 |
|
|
IntFOLD7 HHsearch multi3 TS1 1yqwA 3ayxB |
HIGH: 5.013E-3 |
0.4729 |
|
|
IntFOLD7 IntFOLDTS140 multi3 TS1 1yqwA 1wuiS 3ayxB |
HIGH: 5.091E-3 |
0.4721 |
|
|
IntFOLD7 HHsearch multi8 TS1 1yqwA 3myrA |
HIGH: 5.147E-3 |
0.4715 |
|
|
IntFOLD7 HHsearch multi5 TS1 1yqwA 3myrA |
HIGH: 5.147E-3 |
0.4715 |
|
|
IntFOLD7 HHsearch multi4 TS1 1yqwA 4iucS |
HIGH: 5.201E-3 |
0.4709 |
|
|
IntFOLD7 HHsearch multi1 TS1 1yqwA 4iucS |
HIGH: 5.201E-3 |
0.4709 |
|
|
IntFOLD7 sp3 multi3 TS1 5aa5A 1h2rS |
HIGH: 5.233E-3 |
0.4706 |
|
|
IntFOLD7 sp3 multi1 TS1 5aa5A 1h2rS |
HIGH: 5.233E-3 |
0.4706 |
|
|
IntFOLD7 COMA multi3 TS1 2wpnA 1wuiS |
HIGH: 5.238E-3 |
0.4705 |
|
|
IntFOLD7 COMA multi1 TS1 2wpnA 1wuiS |
HIGH: 5.238E-3 |
0.4705 |
|
|
IntFOLD7 spk2 multi3 TS1 5aa5A 1h2rS |
HIGH: 5.243E-3 |
0.4705 |
|
|
IntFOLD7 spk2 multi1 TS1 5aa5A 1h2rS |
HIGH: 5.243E-3 |
0.4705 |
|
|
IntFOLD7 IntFOLDTS60 multi1 TS1 1yqwA 1wuiS |
HIGH: 5.294E-3 |
0.4700 |
|
|
IntFOLD7 IntFOLDTS140 multi1 TS1 1yqwA 1wuiS |
HIGH: 5.294E-3 |
0.4700 |
|
|
IntFOLD7 spk2 multi5 TS1 1h2rS 4kl8S |
HIGH: 5.652E-3 |
0.4665 |
|
|
IntFOLD7 tR2 TS0 2 0.25 |
HIGH: 5.769E-3 |
0.4654 |
|
|
IntFOLD7 wdPPAS multi4 TS1 5aa5A |
HIGH: 5.838E-3 |
0.4648 |
|
|
IntFOLD7 wdPPAS multi2 TS1 5aa5A |
HIGH: 5.838E-3 |
0.4648 |
|
|
IntFOLD7 PPAS multi5 TS1 1ubmS 3ayxB |
HIGH: 5.857E-3 |
0.4646 |
|
|
IntFOLD7 Env-PPAS multi5 TS1 1ubmS 3ayxB |
HIGH: 5.857E-3 |
0.4646 |
|
|
IntFOLD7 SPARKSX multi6 TS1 1wuiS |
HIGH: 5.864E-3 |
0.4645 |
|
|
IntFOLD7 wMUSTER multi4 TS1 5aa5A |
HIGH: 5.882E-3 |
0.4644 |
|
|
IntFOLD7 wMUSTER multi2 TS1 5aa5A |
HIGH: 5.882E-3 |
0.4644 |
|
|
IntFOLD7 wMUSTER multi3 TS1 5aa5A 1frfS 1frvC 1ubmS |
HIGH: 5.896E-3 |
0.4642 |
|
|
IntFOLD7 SPARKSX multi7 TS1 1wuiS 1yq9A |
HIGH: 5.902E-3 |
0.4642 |
|
|
IntFOLD7 dPPAS2 multi7 TS1 1ubmS 3ayxB |
HIGH: 5.912E-3 |
0.4641 |
|
|
IntFOLD7 wPPAS multi7 TS1 1ubmS |
HIGH: 5.929E-3 |
0.4639 |
|
|
IntFOLD7 wPPAS multi6 TS1 1ubmS |
HIGH: 5.929E-3 |
0.4639 |
|
|
IntFOLD7 wdPPAS multi5 TS1 1ubmS 4gd3S |
HIGH: 5.966E-3 |
0.4636 |
|
|
IntFOLD7 Env-PPAS multi2 TS1 1frfS |
HIGH: 6.042E-3 |
0.4629 |
|
|
IntFOLD7 wMUSTER multi5 TS1 1ubmS 1frvC |
HIGH: 6.067E-3 |
0.4627 |
|
|
IntFOLD7 wdPPAS multi3 TS1 5aa5A 6ehqS 1ubmS |
HIGH: 6.08E-3 |
0.4626 |
|
|
IntFOLD7 wdPPAS multi7 TS1 1ubmS |
HIGH: 6.129E-3 |
0.4622 |
|
|
IntFOLD7 wdPPAS multi6 TS1 1ubmS |
HIGH: 6.129E-3 |
0.4622 |
|
|
IntFOLD7 dPPAS2 multi3 TS1 1frvC 1frfS 1ubmS 3ayxB |
HIGH: 6.244E-3 |
0.4612 |
|
|
IntFOLD7 dPPAS multi5 TS1 1ubmS 3ayxB |
HIGH: 6.326E-3 |
0.4605 |
|
|
IntFOLD7 tR2 TS0 1 0.05 |
HIGH: 6.39E-3 |
0.4600 |
|
|
IntFOLD7 COMA multi8 TS1 1wuiS 3ayxB 5aa5A |
HIGH: 6.461E-3 |
0.4594 |
|
|
IntFOLD7 sp3 multi7 TS1 1h2rS |
HIGH: 6.493E-3 |
0.4591 |
|
|
IntFOLD7 sp3 multi6 TS1 1h2rS |
HIGH: 6.493E-3 |
0.4591 |
|
|
IntFOLD7 COMA multi7 TS1 1wuiS |
HIGH: 6.509E-3 |
0.4590 |
|
|
IntFOLD7 COMA multi6 TS1 1wuiS |
HIGH: 6.509E-3 |
0.4590 |
|
|
IntFOLD7 CNFsearch multi5 TS1 3rgwS 1h2aS |
HIGH: 6.545E-3 |
0.4587 |
|
|
IntFOLD7 CNFsearch multi1 TS1 3rgwS 1h2aS |
HIGH: 6.545E-3 |
0.4587 |
|
|
IntFOLD7 IntFOLDTS60 multi2 TS1 1yqwA |
HIGH: 6.575E-3 |
0.4584 |
|
|
IntFOLD7 IntFOLDTS140 multi2 TS1 1yqwA |
HIGH: 6.575E-3 |
0.4584 |
|
|
IntFOLD7 HHsearch multi6 TS1 1yqwA |
HIGH: 6.575E-3 |
0.4584 |
|
|
IntFOLD7 HHsearch multi2 TS1 1yqwA |
HIGH: 6.575E-3 |
0.4584 |
|
|
IntFOLD7 tR2 TS0 0 0.15 |
HIGH: 6.609E-3 |
0.4582 |
|
|
IntFOLD7 dPPAS multi7 TS1 1ubmS 3ayxB |
HIGH: 6.629E-3 |
0.4580 |
|
|
IntFOLD7 tR2 TS0 2 0.45 |
HIGH: 6.768E-3 |
0.4569 |
|
|
IntFOLD7 LOMETS multi1 TS1 5aa5A |
HIGH: 6.776E-3 |
0.4568 |
|
|
IntFOLD7 COMA multi5 TS1 1wuiS 1yq9A |
HIGH: 6.834E-3 |
0.4564 |
|
|
IntFOLD7 LOMETS multi4 TS1 5aa5A |
HIGH: 6.894E-3 |
0.4559 |
|
|
IntFOLD7 tR2 TS0 2 0.05 |
HIGH: 7.02E-3 |
0.4550 |
|
|
IntFOLD7 tR2 TS0 0 0.05 |
HIGH: 7.084E-3 |
0.4545 |
|
|
IntFOLD7 wPPAS multi4 TS1 5aa5A |
HIGH: 7.111E-3 |
0.4543 |
|
|
IntFOLD7 wPPAS multi2 TS1 5aa5A |
HIGH: 7.111E-3 |
0.4543 |
|
|
IntFOLD7 wMUSTER multi7 TS1 1ubmS |
HIGH: 7.238E-3 |
0.4533 |
|
|
IntFOLD7 wMUSTER multi6 TS1 1ubmS |
HIGH: 7.238E-3 |
0.4533 |
|
|
IntFOLD7 LOMETS multi2 TS1 5aa5A |
HIGH: 7.611E-3 |
0.4506 |
|
|
IntFOLD7 sp3 multi5 TS1 1h2rS 4kl8S |
HIGH: 7.63E-3 |
0.4505 |
|
|
IntFOLD7 tR2 TS0 0 0.25 |
HIGH: 7.63E-3 |
0.4505 |
|
|
IntFOLD7 SPARKSX multi4 TS1 5aa5A |
HIGH: 7.683E-3 |
0.4501 |
|
|
IntFOLD7 SPARKSX multi2 TS1 5aa5A |
HIGH: 7.683E-3 |
0.4501 |
|
|
IntFOLD7 dPPAS2 multi1 TS1 1frvC 1frfS |
HIGH: 7.706E-3 |
0.4500 |
|
|
IntFOLD7 SPARKSX multi5 TS1 1wuiS 3ayxB |
HIGH: 7.937E-3 |
0.4484 |
|
|
IntFOLD7 spk2 multi7 TS1 1h2rS |
HIGH: 7.969E-3 |
0.4482 |
|
|
IntFOLD7 spk2 multi6 TS1 1h2rS |
HIGH: 7.969E-3 |
0.4482 |
|
|
IntFOLD7 dPPAS multi4 TS1 5aa5A |
HIGH: 8.038E-3 |
0.4477 |
|
|
IntFOLD7 dPPAS multi2 TS1 5aa5A |
HIGH: 8.038E-3 |
0.4477 |
|
|
IntFOLD7 CNFsearch multi7 TS1 3rgwS |
HIGH: 8.171E-3 |
0.4469 |
|
|
IntFOLD7 CNFsearch multi6 TS1 3rgwS |
HIGH: 8.171E-3 |
0.4469 |
|
|
IntFOLD7 CNFsearch multi3 TS1 3rgwS |
HIGH: 8.171E-3 |
0.4469 |
|
|
IntFOLD7 CNFsearch multi2 TS1 3rgwS |
HIGH: 8.171E-3 |
0.4469 |
|
|
IntFOLD7 tR2 TS0 1 0.25 |
HIGH: 8.392E-3 |
0.4454 |
|
|
IntFOLD7 tR2 TS0 0 0.45 |
HIGH: 8.525E-3 |
0.4446 |
|
|
IntFOLD7 PPAS multi4 TS1 5aa5A |
HIGH: 8.644E-3 |
0.4439 |
|
|
IntFOLD7 PPAS multi2 TS1 5aa5A |
HIGH: 8.644E-3 |
0.4439 |
|
|
IntFOLD7 tR2 TS0 0 0.35 |
HIGH: 9.102E-3 |
0.4411 |
|
|
IntFOLD7 tR2 TS0 1 0.35 |
HIGH: 9.6E-3 |
0.4383 |
|
|
IntFOLD7 dPPAS2 multi2 TS1 1frvC |
HIGH: 9.707E-3 |
0.4377 |
|
|
IntFOLD7 IT5 TS1 |
HIGH: 9.791E-3 |
0.4372 |
|
|
IntFOLD7 spk2 multi2 TS1 5aa5A |
MEDIUM: 1.009E-2 |
0.4356 |
|
|
IntFOLD7 tR2 TS0 1 0.45 |
MEDIUM: 1.046E-2 |
0.4337 |
|
|
IntFOLD7 IntFOLDTS140 multi4 TS1 1yqwA 1wuiS 4gd3S 1ubmS 3ayxB 5aa5A 3n2wA 1e4iA |
MEDIUM: 1.048E-2 |
0.4336 |
|
|
IntFOLD7 sp3 multi2 TS1 5aa5A |
MEDIUM: 1.053E-2 |
0.4334 |
|
|
IntFOLD7 COMA multi2 TS1 2wpnA |
MEDIUM: 1.292E-2 |
0.4225 |
|
|
IntFOLD7 IT5 TS2 |
MEDIUM: 1.298E-2 |
0.4222 |
|
|
IntFOLD7 sp3 multi8 TS1 1h2rS 4kl8S 5aa5A 4b3kA 3n2wA 2x3lA |
MEDIUM: 1.427E-2 |
0.4172 |
|
|
IntFOLD7 spk2 multi8 TS1 1h2rS 4kl8S 5aa5A 1j5rA |
MEDIUM: 2.266E-2 |
0.3926 |
|
|
IntFOLD7 IT5 TS3 |
MEDIUM: 2.483E-2 |
0.3877 |
|
|
IntFOLD7 DMPf TS1 |
MEDIUM: 2.997E-2 |
0.3777 |
|
|
IntFOLD7 DMPf TS3 |
MEDIUM: 4.298E-2 |
0.3585 |
|
|
IntFOLD7 DMPf TS2 |
LOW: 6.779E-2 |
0.3343 |
|
|
IntFOLD7 DMPf TS4 |
LOW: 7.815E-2 |
0.3267 |
|
|
IntFOLD7 sp3 multi4 TS1 5aa5A 3n2wA 3bo9A |
UNCERT: 4.506E-1 |
0.2094 |
|
|
IntFOLD7 spk2 multi4 TS1 5aa5A 6o15A |
UNCERT: 5.145E-1 |
0.1959 |
|