Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_multi_HHsearch_TS1.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_multi_HHsearch_TS1.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 1jwqA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.7606838 (Target length: 234, Aligned residues: 178)
RMSD: 0.96
TM-score: 0.74294
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
---MKVVVIDAGHGAKDSGAVGISRKNYEKTFNLAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGSSASNGTETYYQR---------------------------------------------SASKAFANVMHKYFAPA-TGLTDRGIRYGNFHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYLDVK-------
.::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
SNASFRVVLDPGHGGIDGGARGV-TGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSINFANNVVSNLSKSHINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAEYRQKIMQPL
Jmol view of the structural alignment of the model (blue) with the template 1xovA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.75641024 (Target length: 234, Aligned residues: 177)
RMSD: 2.25
TM-score: 0.6854
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
--AMSNYSMSRGHSDKCVGAEDI--LSEIKEAEKVLNAASDELKREG-HNVKTFI--DRTSTTQSANLNKIVNWHNANPADVHISVHLNAG--K-GTGVEVWYYAG------DEK-------------------------------------GRKLAVEISAKMAKA-LGLPNRGAKATKDLRFLNSTKGTAVLLEVCFVDRKEDANAIHKSGMYDKLGIAIAEGLTG--K-TVAAKNPNRHSGAVVDSVPMLSKMDFKSSPIKMYKAGSSLLVYEHNKYWYKAYINDKLCYIYKSFCISNGKKDAKGRIKVRIKSAKDLRIPVWNNTKLNSGKIKWYSPGTKLSWYDNKKGYLELWYEKDGWYYTANYFLK
::::::::::::::::::::: :::::::::::::::::::::: ::::::: .::. ::::::::::::::::::::::::: : ::::::::::. .:: ::::::::::::::: ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: : .:: : ...:
SNASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFL-----RLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSINFANNVVSNLSKSHINLINNPHRYA-DFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAEYRQK-I--------------------------------------------------------------------------------------------------------------MQPL---------------------