Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_3dfua_spk2_TS8.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_3dfua_spk2_TS8.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 3dfuA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.82905984 (Target length: 234, Aligned residues: 194)
RMSD: 2.92
TM-score: 0.68073
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
QAPRLRVGI------FDDGSSTVN-------AEKLDSV--------GHYVTVLHAPEDIRDFELVVIDAHGVEGYVEKLSAFARRGQFLHTSLTHGITVDPLETSGGIVSAHPIGQDRWVASALDELGETIVG-LL-VGELGGSIVE---------IADDKRAQLAAALTYAGFLSTLQRDA-SYFLDEFLGDPDVTSDI-VDSAQQFQALPSLDEVIAQYDSINNPGRQRLFRDLARRQAEI--SRA-QDIELWAIQKE---
::::::::: ::::::::: ::::::: ::::::: :: ::::::: :::::::::::: .::::::::: ::::::: :::::::: :::::::: :::::: :: :::::::::: :.:::::::::::::::::::::::: ::::: : ::::::: ::::. ::::: ::::::: :...:::::::::::::... ::: ..::::::..:
SNASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVAL----TR-DSDIFLR----LSERVKKAQEFD---ADLFISIHAD-TIDVHSL--RGATVYTI----SDEASDAI-AKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSINFANNVVSNLSKSHINLIN---N-PHRYADFQVLKAP-DVPSV---LIEIGYL-SNKEDEKLLNNPQWRKQMAASIAYSIRQFAEYRQKIMQPL