Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_2ek8a_sp3_TS5.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_2ek8a_sp3_TS5.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 2ek8A (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.84615386 (Target length: 234, Aligned residues: 198)
RMSD: 3.49
TM-score: 0.70136
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
ADHQITKRTDAENMYNTIQFLSQAPRVAGSPEELKAVRYIEQQFKSYGYHVEVQPFQF----EGYTAPSEVTLKIGTEKKEGEAFT-YSPNSDVTAELVYVGL--GTTADVAGKDLNGKIALIQRGNIS-----------FADK-VRNAAKQGAKAVIIYNNTDGKLNGTLGGS------DASFVAAVGITKQEGDALAANLRAGEKITATVKVAGAEVKTL------TSHNVIATKKPDANKKNTNDIIIIGSHHDS-VEKA-PGANDD-AS-GVAVTLELARVMSKLKTDTELRFITFGAEENGLIGSKKYAASLSEDEIKRTIGMFQLDMVGSKDAGDLIMYTIDGKKNRVTDLGAAASSRLSGVLPYGQEGRSDHESFHALGIPAALFIHAPVEPWYHTPNDTLDK-ISKEKLDNVADIVGSAVYQAARPGELVIEPIDYPRRN
. . .. .:..... .:.: ::::::::. .:.. ..:: ::::::::::: ::::::::::: ...: .::... :: ::: ::::::::::::::::: : . : :: :: ::: : .::::::::::::: :::: : :::::::::::::::::::::: ::::::::::::::::::: :. ::: ::::: :::::::::::::::::::::::::::::::
----------------------------------------------------------SNASF-----------------------RV---------------VLDP---------------GHGGIDGGARGVTGILEKDVTLAFARALRDEL--------------------QKGSHTIVAL----------------------------------TRDSDIFLRLSERVKKAQEFD--------ADLFISIHADTIDVHSLRGATVYTISDEAS--DAIAKSLAESENKVDLL-D-G---------L--PK-EE---SLE-L-TDILLDLTRRETHA-FSIN------F-ANNVVSNLSKSHINLINNPHRY-ADFQVLKAPDVPSVLIEIG-YL--SNK--EDEKLLNNPQWRKQMAASIAYSIRQFAEYRQKIMQPL------