Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_1wdna_spk2_TS5.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_1wdna_spk2_TS5.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 1wdnA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.8632479 (Target length: 234, Aligned residues: 202)
RMSD: 1.76
TM-score: 0.80243
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
---KLVVATDTAFVPFEFKQGDLYVGF-DVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLR-QF-PN-------IDNAYMELGTNRADAV-LHDTPNILYFIKT---------AGNGQFKAV---GDSLEAQQYGIAFPK-----G-SDELRDKVNGALKTLRENGTYNEIYKKWFGTEPK
::::::::::::::::: :::::: ::::::::::: ::::::::: ::::::::: ::::: :: : :::. ::: .:: ::::::::::::::: : :: :::::::::::::::::::::::::: :: :: :::::::::::::::: ::::::::::::: ::::::::: ::::::::::::::: : :::::::::::::::: ::::::::::::::
SNASFRVVLDPGHGGIDGGA-RGVTGILEKDVTLAFARA--LRDELQKGS--HTIVALTRD-SDIFL--RL-S-ERVK-KAQ--EFD-ADLFISIHADTIDVH-S-LR-GATVYTISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSINFANNVVSNLSKSHINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSI--RQFAEYRQKIMQPL--