Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_1dquA_HHsearch_TS10.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_1dquA_HHsearch_TS10.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 1dquA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.2777778 (Target length: 234, Aligned residues: 65)
RMSD: 4.5
TM-score: 0.20699
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
SYIEEEDQRYWDEVAAVKNWWKDSRWRYTKRPFTAEQIVAKRGNLKIEYPSNVQAKKLWGILERNFKNKEASFTYGCLDPTMVTQMAKYLDTVYVSGWQSSSTASSTDEPSPDLADYPMNTVPNKVNHLWMAQLFHDRKQREERMTTPKDQRHKVANVDYLRPIIADADTGHGGLTAVMKLTKLFVERGAAGIHIEDQAPGTKGKVL-------------VPISEHINRLVAIRAQADIMGTDLLAIA------------RTDSEAATLITSTIDHRDHPFIIGSTNPDIQPLNDLMVMAEQAGKNGAELQAIEDEWLAKAGLKLFNDAVVDAINNSPLPNKKAAIEKYLTQSKGKSNLEARAIAKEIAGTDIYFDWEAPRTREGYYRYQGGTQCAINRAVAYAPF---ADLIWMESKLPDYKQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPRDEQETYIKRLGALGYAWQFITLAGLHTTALISDTFAKAYAKQGMRAYGELVQEPEMANGVDVVTHQKWSGANYVDNMLKMITGG---------------------------------------------------------------------------------------------------------------------------------------------
:::: :::::::..... .::::::::::::::.. ..::: : .:: :: :::: ::::: ::::: : :::...
------------------------------------------------SNAS------------------------------------------------------------------------------------------------------------------------------------------FRVVLDPGHGGI-----DGGARGVTGILEKDVTLAFARALRDELQKG-----------SHTIVALTRDSDIFLRL-------------------------------------------------------------------------------------------------------------------------------S-ERV-KK--AQEFDADLFISI---------------------------HADTI--D-VHSLRG-------------------------------------------------------------------------------------ATVYTISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSINFANNVVSNLSKSHINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAEYRQKIMQPL