Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_multi_HHsearch_TS1.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_multi_HHsearch_TS1.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 1twiA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.6873977 (Target length: 611, Aligned residues: 420)
RMSD: 3.19
TM-score: 0.63814
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
-------MLGNDTVEIKDGRFFI---DGYDAIELAEKF-----GTPLYVMSEEQIKINYNRYIEAFKRWEEETGK--EFIVAYAYKANANLAITRLLAKLG----CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGI---EANIR-AFNVDSISELILINETAK-ELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESGIAMKAIKMALEMEYVN-VVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIE-IEDVNLGGGLGIPYYKD-K---QIPTQKDLADAIINTM--LKYKDKVEMPNLILEPGRSLVATAGYLLGK---------------VHH--IKET--P-----VTKWVM------------------IDAGMND-----------------------------------------------MM-R---PA-MYEAYHHIINCKV-KN-EKE-VV-SIAGGLCESSDVFGR--------DRELDKVEVG--DVLAIFDVGAYGISMANNYNARGRPRMVLTS--KKGV--FLIRERETYADLIAKDIVPPHLL---------------------------------------------
.::::::::::::::: :::::::::::: :::::::::::::::::::::::::::::::: :::::::::::::::::::::::: :::::::::::::::::::::::::::: ::::::::::: ::::: :::::::::::::::::: :::::::::::::::::::::: ::::::::::::::: : :::.::::::::::: :::::::::::::::::::::::::::::::::::::: ::::::::::::::::: : :::::::::::::::: :::::::::::::::::::::::::::::: ::. .... . .::... .:::::: :. . . ...:::::::::: :: ... . ..... ...... ....:::::: :::::::::::::::::::.::::::::::: :::: ::::::::::::::.:...
MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIW-AKSGGINSKFGLTST-E-LIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDF-WGLEQNFPIMPLDRLDEEPTRSA-SIWDIT---CDSDGE-ISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD----IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV
Jmol view of the structural alignment of the model (blue) with the template 2p3eA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.62193125 (Target length: 611, Aligned residues: 380)
RMSD: 3.03
TM-score: 0.57702
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
----ELLKEYNPYLEYRDGELFI---EGVSLKELAQTF-----GTPLYVYSSNFIKERFEAYRKAFP--D--------ALICYAVKANFNPHLVKLLGELG----AGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVD---SEIL-MFNVESRQELDVLNEIAG-KLGKKARIAIRVNP---------------SKFGVDIREAQKEYEYASKLENLE-IVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGF-DIKYLDIGGGLGIKYKPEDKEP----APQDLADLLKDLL---------VKAKIILEPGRSIMGNAGILITQ---------------VQF--LKDK--G-----SKHFII------------------VDAGMND-----------------------------------------------LI-RPSI------YNAYHHIIPVET-KEVVAD---------IVGPICETGDFLALD---------REI-EE-VQRG-EYLAVLSAGAYGFAMSSHYNMRPRAAEVLV-EN-GSV--KLIRKRENYDYIVEPSLDI------------------------------------------------
...:::::::::::::::: :::::::::::: :::::::::::::::::::::::: : ::::::::::::::::::::::: ::::::::::::::::::::::::::::: ::::::::::: :::: :::::::::::::::::: :::::::::::::: ::::::::::.:.::::::::::: ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: ::::::::::::: ::::::::::::::::::::::: ::. .... . .::... .:::::: :. . ..:::::::::: :: ... :::.. ... :. :::: :::::::::::::::::::..::::::::: :: .:: ::::::::::::....
MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGF-KDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQS---MPDFWGLEQNFPIMPLDRLDE----EPTRSASIWDIT------CDSDG-EISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDL---DYDIHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV