Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_2yxxa_sp3_TS8.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_2yxxa_sp3_TS8.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 2yxxA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.57937807 (Target length: 611, Aligned residues: 354)
RMSD: 3.03
TM-score: 0.53315
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
--------------------------------DILRKVAEIHGT-PTYVYFEETLRKRSRLVKEVFE--------GVNLLPTFAVKANNNPVLLKILREEG----FG-DVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQEHFLREDVR-----IVNVDSFEEE-----IWRELNPEGVEYFIRVNPEVD-AKTHPHISTGLKKHKFGIPLEDL-D--S-FERFR-S-NIRGLHVHIGSQITRV----EPFVEAFSKVVRASER--YGFEEINIGGGWGINYSGEELD------LSSYREKVVPDLKR--------FKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVV-------------------------------VDGG-------------------------NVLI----------------RPAL---YSAYHR-----------------------------------IFVLGKQGKERA-DVVG-PLC-ES----GDVI-AYDRELPE-VE-PG--DIIAVENAGAYG---YTSNNYNSTTRPAEVLVRENG-RISLIRRRET-EDIF-KDVV----------------------------------------------
:::::::::::: :::::::::::::::::::::: :::::::::::::::::::::::::: :: ::::::::::::::::::::::::: ::::::::::::::: :::::::::: ::::::::::::::::::::: ::::: :::::::::::::::: : : ::::: : :::::::::::::::: :::::::::::::::: :::::::::::::::::::::: :::::::::::::: :::::::::::::::::::::.. ..:. :::: :... :.::.. :::: : ...:. .... ... :. .... .::::.. . . .::::::::::: ::.::..:::::::::::::: :::::::::: :::. ....
MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWA--KSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPV-------------LELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRL-D-EEPTRSASIWDITCDSDGEISYSKDKPLFLHDV-DV-EK-ENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV