Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_2plja_spk2_TS6.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_2plja_spk2_TS6.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 2pljA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.61374795 (Target length: 611, Aligned residues: 375)
RMSD: 2.87
TM-score: 0.56423
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
-------HSQSIFDIH--PVLS------AEEIHLIEASVEQ-FGAPLLLLDCDVIRQQYRALKNALP----------NVTLHYALKPLPHPVVVRTLLAEG----ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAY---GCN-VFVVDNLNELEKFKAYRD-------DVELLVRLS------------FSKKFGCSPEQALVIIETAKEWNI--RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMP------IDQFCA----PINEALSLLPE-TVHVLAEPGRFICAPAVTSVASVMGQAEREGQ--------------------IWY--------Y-LDDG------------IY-G-SF----------------------------------------------SGLMFDDA--R-YPLTTIKQG--GELIPSV-LSGPTCDS-V-DV-I-AENILLPKLNNG--DLVIGRTMGAYTSATATDFNFFKRAQTIAL---NEFV------------------------------------------------------------------
:::::::.. .::. ::::::::::::: ::::::::::::::::::::::::: :::::::::::::::::::::::: :::::::::::::::::::::::::::: ::::::::::::: ::: :::::::::::::::::. .:::::::: :.:::::::::::::::::::::. :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: ::::::::::: :::::::::::::::::::::::..::..... .:: : :::: :: : :. ....:::: : :::::::.. .:::::: .::.:.:. . .. : ..::.:.::.:: :::::::.:::::::::::::::::::::: ::::
MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV