Links to interactive graphical output:

RasMol generated image of per-residue accuracy for the model nFOLD4_2plja_spk2_TS6.bfact.pdb



Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]

Jmol view of the per-residue accuracy for the model nFOLD4_2plja_spk2_TS6.bfact.pdb

[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]

Jmol view of the structural alignment of the model (blue) with the template 2pljA (red) using TM-align

Download the superposition file (RasMol script).

Coverage of target: 0.61374795 (Target length: 611, Aligned residues: 375)
RMSD: 2.87
TM-score: 0.56423
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
-------HSQSIFDIH--PVLS------AEEIHLIEASVEQ-FGAPLLLLDCDVIRQQYRALKNALP----------NVTLHYALKPLPHPVVVRTLLAEG----ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAY---GCN-VFVVDNLNELEKFKAYRD-------DVELLVRLS------------FSKKFGCSPEQALVIIETAKEWNI--RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMP------IDQFCA----PINEALSLLPE-TVHVLAEPGRFICAPAVTSVASVMGQAEREGQ--------------------IWY--------Y-LDDG------------IY-G-SF----------------------------------------------SGLMFDDA--R-YPLTTIKQG--GELIPSV-LSGPTCDS-V-DV-I-AENILLPKLNNG--DLVIGRTMGAYTSATATDFNFFKRAQTIAL---NEFV------------------------------------------------------------------
       :::::::..  .::.      ::::::::::::: :::::::::::::::::::::::::          ::::::::::::::::::::::::    :::::::::::::::::::::::::::: :::::::::::::   ::: :::::::::::::::::.       .::::::::            :.:::::::::::::::::::::.  ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::      ::::::    ::::::::::: :::::::::::::::::::::::..::.....                    .::        : ::::            :: : :.                                              ....::::  : :::::::..  .:::::: .::.:.:. . .. : ..::.:.::.::  :::::::.::::::::::::::::::::::   ::::                                                                  
MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV