Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_2plja_sp3_TS7.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_2plja_sp3_TS7.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 2pljA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.60720134 (Target length: 611, Aligned residues: 371)
RMSD: 3.22
TM-score: 0.5533
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
-----------------HSQSIFDIHP-VLSAEEIHLIEASV-EQFGAPLLLLDCDVIRQQYRALKNALP----------NVTLHYALKPLPHPVVVRTLLAEG----ASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAY---GCN-VFVVDNLNELEKFKAYR-------DDVELLVRLSF---S---------KKFGCSPEQALVIIETAKEWNI--RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMP------IDQFCA----PINEALSLLPE-TVHVLAEPGRFICAPAVTSVASVMGQAE--REG--------------Q-IWYYLDDG-------------------------IYGS----------------FSGLMFDDARYPLT-T------------------------------IKQG-----GELIPSVLSGPTCDS---V-DVI-AENILLPKLNNGD---LVIGRTMGAYTSATATDFNFFKRAQTIAL---NEFV------------------------------------------------------------------
.::::.... .:: ::::::::: ::::::::::::::::::::::::::: :::::::::::::::::::::::: :::::::::::::::::::::::::::: ::::::::::::: ::: ::::::::::::::::: ::::::::::: : :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: ::::::::::: ::::::::::::::::::::::...... ... . ......:. .::: :::::::::::::. . ::.. ...::::........ . ..: .::... ...... ::::::::::::::::::::::::::::: ::::
MMDYGIDIWGNENFIIKNGKVCINYE-KKPA--IIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLH-DVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV