Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_2o0tA_HHsearch_TS3.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_2o0tA_HHsearch_TS3.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 2o0tA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.7037643 (Target length: 611, Aligned residues: 430)
RMSD: 2.72
TM-score: 0.66046
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
NELLHLAPNVWPRNTTRDEVGVVCIA-GIPL-TQLAQEY-----GTPLFVIDEDDFRSRCRETAAAFG---------SGANVHYAA-AFLCSEVARWISEEG----LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAG----VGHIVVDSMTEIERLDAIAGE-AGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATD-HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPS-D---DPPPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTV--KD-VDVSAT---AH--RRYV----------------------------------------------------------------------------------SVDGGMSDNIRT-ALYGAQYDVRLVSRVS-DAPPVPA--RLVGKHCESGDIIVRDTW-VPD-DIR--PGDLV--AVAATGAYCYSLSSRYNMVGRPAVVAVHA--G--NARLVLRRETVDDLLSLEVR----------------------------------------------
:: :::::::::::::::...::::: :::: ::::::: :::::::::::::::::::::::: ::::::::: ::::::::::::::: ::::::::::::::::::::::::::::: ::::::::::::: ::::::::::::::::::::: ::::::::::::::::::: ::::::::::::::::: : :::::::::::: :::::::::::::::::::::::::::::::::::: : :::::::::::::::::::::: : :::::::::::::::::::::::::::::::::::::::::::::::...:: .. ... .. .:.. .::::::::::: ::::::::::::.... .:.. ...:::::..::::.... .:: :.: ....: ::::::::::::::::::::::::::::: : :::::::::::::::::.:.
MM-DYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGF-KDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVG-IWAKSGGINSKFGLTST-E-LIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELR---K-MGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAEN---KLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTR---SASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV