Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_2nvaA_COMA_TS3.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_2nvaA_COMA_TS3.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 2nvaA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.599018 (Target length: 611, Aligned residues: 366)
RMSD: 1.53
TM-score: 0.58265
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
------------------------------MNSVVNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFPRVT----------PHYAVKCNNDEVLLKTMCDKN----VNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAK--D-QGVDI-ATFDSSFELDKIHTYHP---NCK--MILRIRCDDP-----NATVQLGNKFGANEDEIRHLLEYAKQLDI--EVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHK-PYILDIGGGLHADID---LS----TYMSDYINDA---IKDFFPEDT---VTIVAEPGRFFAEHYSVLATQVI-GKR--------------VRDGL--YEYF-----------FNESTY-----------GGFS--N---VI-F-----EK--SV----PTPQLLRDVPDDE--EYV-PSVLY------GC-T------------------------C--DG--VDVINHN-VALPELHI-G--DWVYFPSWGAYTNVLTTSFNGFGEYDVYYI-------------------------------------------------------------------------
:::::::::: :::::::::::::::::::::::::::::: ::::::::::::::::::::: ::::::::::::::::: :::::::::::::::::::::: : ::::: ::::::::::::::::: ::: :::::::::: ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: ::::::::::::::: :: :::::::::: ::::::::: ::::::::::::::::::::::: ::: ::::: :::: .::::: :::: : :: : :: :: ::::::::::::: ::: ::::: :: : : :: ::::::: :::::::: : ::::::::::::::::::::::::::::::
MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRD--DGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAY-NNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV