Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_2j66a_spk2_TS5.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_2j66a_spk2_TS5.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 2j66A (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.63011456 (Target length: 611, Aligned residues: 385)
RMSD: 1.51
TM-score: 0.61476
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
--------------------------DQAEITALTKRF-----ETPFYLYDGDFIEAHYRQLRSRTNPA---------IQFYLSLKANNNIHLAKLFRQWGL----GVEVASAGELALARHAGFSAENIIFSGPGKKRSELEIAVQS---GIY-CIIAESVEELFYIEELAEK-ENKTARVAIRINPDK-SFTAI-KMGGVPRQFGMDESMLDAVMDAVRSLQFTKF-IGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPYFEKALDIG-------KITRTVSDYVQEAR-DTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVF--------------------------------------------------------------------------------------------------VIVD-----GG-MHH-HAASPMEY---IPLEKVTIAGPLCTPEDC----LGKDVHVPALYPGDL---VCVLNSGAYGLSFSPVHFLGHP--TPIEILKRNGSYEL--IRRKGTADDIVAT-QL----------------------------------------------
:::::::::::: :::::::::::::::::::::::::: :::::::::::::::::::::::: ::::::::::::::::::::::::::: ::::::::::::: ::: ::::::::::::::::::: ::::::::::::::: ::::: ::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: :::::::::::::: ::::::::::::::::::::::::::::::::::::. ..:: :: ::: :::::::: :.:::::::::::::::. ::::::::::::::: :::::::::::::::: ::::: :::::::::::::: ::::::::::::: ::
MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEY-SQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYA--ENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMK-HNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV