Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_1kqfa2_sp3_TS10.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_1kqfa2_sp3_TS10.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 1kqfA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.86579376 (Target length: 611, Aligned residues: 529)
RMSD: 2.17
TM-score: 0.8228
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
QARNYKLLRAKEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQARVHGPTVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRSGTDITFLSGVLR-----YLIENNKINAEYVKHYT------NASLLVRDDFAFEDGLFSGYD--AEKR------QYDKSSWNYQLDENGYAKRDETLTHPR--CVWNLLKEHVSRYTPDVVENICGT-PK-----A-DFLKVCEVLASTSAPDRTTTFLY----ALGW----TQHTV------GAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDL-----GLLSTSLPGYLTLPSEKQV----DLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSF-Y-GDAAQKENNW--GYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKN---KV-----VSCLSKLK-Y-MVVIDPLVTETST---FWQNHGESNDVDPASIQTEVFRLPSTCFAE-------------EDGSIANSGRWLQWHWKGQDAPGEARNDGEI-LAGIYHHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYTGSWTEQGNQMANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLIQWNGSKWTGNDIPDFGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHYEPIETPLGTNPLHPNVVSNPVVRLYEQDALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAIAQPEQFVEISETLAAAKGINNGDRVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGIPIHWGFEGVARKGYIANTLTPNVGDANSQTPEYKAFLVNIEKA
:::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: : :::::: :: : .::::::::::::::::: :::: ::::::::::::::: ::::::::::::::::: ::::::::::::::::::... :... .....:::::::::::::::::::::: :::::::::::::::::::::::: :: : ::::::::::::::::::::::: :::: ::::: :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: :::::::::::::::::::::::::::::::::::: : :::::::::: ::::::::::::::::::::: :::::::::::::::::::::: :: :::::::: : ::::::::::::: :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: :::::::::::::::::::::::: ::. : :::::::::: . .::. ..
-----------------------------------------------------------------------------------------------------------MMDYGIDIWGNENFIIKNGKVCINYEKKPA-IIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGY--K--GGFNAV---YP-L-KVNQYPGFVKNLVKLGKD---------------YNYG-LEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAI-QDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQKK--HIL------G---ELYLFLNDNG---Y----------------LKSI----------------------------------------------------------------------------------------GV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------