Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_1hkva_sp3_TS2.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_1hkva_sp3_TS2.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 1hkvA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.7086743 (Target length: 611, Aligned residues: 433)
RMSD: 2.59
TM-score: 0.66267
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
NELLHLAPNVWPRNTTRDEVGVVCIA---GIPLTQLAQEY-G-T---PLFVIDEDDFRSRCRETAAAF---------GSGANVHYAAKAFLCSEVARWISEEG----LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVK---AGVG-HIVVDSMTEIERLDAIAG-EAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVA-SGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDD----PPPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDV--SAT--AHR-------------RYVSVDG----------------------GMSDNI-----------------RTALYGAQY-D----------------------------------VRLVSRVSDAPPVPARLVGKHCESG---DIIVRDTWVPDDIRPGD---LVAVAATGAYCYSLSSRYN-M-VGRPAVVAVHAG--NARLVLRRETVDDLLSLEVR----------------------------------------------
:::::::::::::::::::::::: ::::::::::: : : ::::::::::::::::::::: :::::::::::::::::::::::::: ::::::::::::::::::::::::: ::::::::::::::: :::: :::::::::::::::::: :::::::::::::::: ::::::::::::::::::::: ::::::::::::::::: : :::::::::::::::::::::::::::::::::: :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::.... . ... ..::::. :::::: ::::::::: : ::::::::::::....::::::::: ::::::::::::::::: ::::::::::::::::::: : :::::::::::: ::::::::::::::::....
--MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPIT-VNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHS-AGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQF-T-MIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG----AKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQE-YAE--NKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV