Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_1f3tA_HHsearch_TS6.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_1f3tA_HHsearch_TS6.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 1f3tA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.60065466 (Target length: 611, Aligned residues: 367)
RMSD: 1.82
TM-score: 0.58216
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
-----------------------RFLEGFNTRDALCKKIS---GDPFFVADLGDIVRKHETWKKCLP----------RVTPFYAVKCNDDWRVLGTLAALG----TGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYAR--D-SGVD-VMTFDCVDELEKVAKT-----HPKAKMVLRIST---------------VKFGAKVEDCRFILEQAKKLNI--DVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGF-NMHILDIGGGFPGTRDA-P------LKFEEIAGVINNALEKHFPP--DLKLTIVAEPGRYYVASAFTLAVNVIAKK---------------------------------------------------------------------------------------------VTQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVER---YYLPEMQV---G-EWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS--------------------------------------------------------------------
..:::::::::::::.. :::::::::::::::::::::::: :::::::::::::::::::::::: :::::::::::::::::::::::::::: ::::::::::: : :::: :::::::::::::::: :::::::::::: :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: ::::::::::::::::: : :::::::::::::::::::: :::::::::::::::::::::::::::.. .:::::::::::::::::::::::::::::::: :::.:::::::::::::::::::::: :::::::: : :::::::::::::::::::::::::::::::::..
MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLD-RLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEK---------GYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV