Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_multi_HHsearch_TS1.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_multi_HHsearch_TS1.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 2p3eA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.9424658 (Target length: 365, Aligned residues: 344)
RMSD: 1.17
TM-score: 0.91951
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
ELLKEYNPYLEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP--DALICYAVKANFNPHLVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNP----------------SKFGVDIREAQKEYEYASKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYKPEDKEPAPQDLADLLKDLL--VKAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETKE-VVADIVGPICETGDFLALDREIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPSLDI
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: ::::::::::: ::::::::::::::: ::::::::::::::::: ::::::::::: :::::::::::::: :: : ::::::::::::::::::::::::: :::::::::::::::::::::::::: :::: :::::::::: ::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: :::. ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: .
-----------------------------MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRE-RFGKETHAYSV-AYGDNEIDEVVSHAD-KIIFNSISQLERFADKA----AGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERV--MD----R-INGFMIHNNCENKDFGLFDRMLGEI---EERFGALIARVDWVSLGGGIHFTGDD-YPVD---AFSARLRAFSDRYGVQIYLEPGEASITKSTTLEVTVLDTLYNG-KNLAIVDSSIEAHMLDLLIYRETAKVL-PNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSL--S
Jmol view of the structural alignment of the model (blue) with the template 2qghA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.99452055 (Target length: 365, Aligned residues: 363)
RMSD: 1.05
TM-score: 0.97607
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
NYEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEKK-NKRFVIVDAGMNDFLRPSLYHAKHAIRVITPSEISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALED-KIRVIRKREALEDLWRLEEEGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: ::::::::::::::: ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: :: : ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: ..:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: .
-------MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRE-RFGKETHAYSV-AYGDNEIDEVVSHAD-KIIFNSISQLERFADKA----AGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERV--MD----R-INGFMIHNNCENKDFGLFDRMLGEI---EERFGALIARVDWVSLGGGIHFTGDDYPVDA---FSARLRAFSDRYGVQIYLEPGEASITKSTTLEVTVLDTLYNGKNLAIVDSSIEAHMLDLLIYRETAKVLP-NEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSL-S--