Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_2todA_COMA_TS4.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_2todA_COMA_TS4.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 2todA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.8931507 (Target length: 365, Aligned residues: 326)
RMSD: 1.12
TM-score: 0.8749
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
--GDPFFVADLGDIVRKHETWKKCLPRV--TPFYAVACNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIST--------------LSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPAQSFMYYVNDGVYGSFNCIL-YDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVS--------------------
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: :::::::: ::::::::::::::::: ::::::::::::::::::::::::::: :::::::::::::::: : :::::::::::::::::::::::::: ::::::::::::::::::::::::::: :::::::::::::::: :: ::::::::::::::::::::::::::::: :::::::::::::::::: :::::::::: . . ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERF-GKETHAYS-VAYGDNEIDEVVSHADK-IIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERV--M----DRINGFMIHNNCENKDFGLFDRMLGE---IEERFGALIARVDWVSLGGGIHFTGDD-YPVDAFSARLRAFSDR-YG----VQIYLEPGEASITKSTTLEVTVLDTLYNG--KNLAIVDSSIEAHMLDLLIYRETAKVLPN---E---G-SHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS