Links to interactive graphical output:

RasMol generated image of per-residue accuracy for the model nFOLD4_2pljA_HHsearch_TS9.bfact.pdb



Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]

Jmol view of the per-residue accuracy for the model nFOLD4_2pljA_HHsearch_TS9.bfact.pdb

[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]

Jmol view of the structural alignment of the model (blue) with the template 2pljA (red) using TM-align

Download the superposition file (RasMol script).

Coverage of target: 0.9041096 (Target length: 365, Aligned residues: 330)
RMSD: 1.0
TM-score: 0.88916
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
HSQSIFDIHPVLSAEEIHLIEASVEQFGAPLLLLDCDVIRQQYRALKNALP--NVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLVRLSF--S-------------KKFGCSPEQALVIIETAKEWNIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNEFV------------------
                       .:  ::::::::::::::::::::::::  :::::::::::::::::::::::::::::::::::::::: :::::::::: :::::::::::::::: ::::::::::::::::::::::::::::  :             .:::::::::::::  ::   ::: ::::::::::::::::::::::::: :   :::::::::::::::::::::::::::  ::::::::::::::  :::::::::::::::::::::::::::: :::::::::::::::::::::::::::::  ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::                  
-----------------------MI--ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRE-RFGKETHAYS-VAYGDNEIDEVVSHAD-KIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERV--MD---RIN-GFMIHNNCENKDFGLFDRMLGEIEE-R---FGALIARVDWVSLGGGIHFTGDDYPVD--AFSARLRAFSDRYG--VQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKVLP--NEG-SHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS