Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_1knwa_spk2_TS1.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_1knwa_spk2_TS1.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 1knwA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.96712327 (Target length: 365, Aligned residues: 353)
RMSD: 2.01
TM-score: 0.91493
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
PHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAAL-----KQFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGV-DYAHLEQVCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHA-PTVET--VVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDN-GQARLIRRRQTIEELLALELLHH--
:: ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: :: : :::::::::: :::::::::::::::::::::::::::::::::::: . ::::::::::::::::::: :::::::::::::::::::::::::::.. ..::::::::::::::. . :::: :::.. .:.:. ::::::::::::::::. :::.: :: ::::::::::::::::::::::::::::::::: ::::::::: :::::...
------------------MI---ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGR---ER---FGKETHAYSVAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEW--DVPKVERVMD--RI-N-GFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTG---D-DYPVDAFSARLRAFSDRYG------VQIYLEPGEASITKSTTLEVTVLDTLYNG-KNLAIVDSSIEAHMLDL-----L-IYRE-----TAKVLPNEGSHSYMICGKSCLAGDVFGEFR----FAEEL--KV-GDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREF-TYADYEQS-----LS