Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_3p42a_spk2_TS10.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_3p42a_spk2_TS10.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 3p42A (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.8608696 (Target length: 230, Aligned residues: 198)
RMSD: 2.69
TM-score: 0.76008
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
QGVTIYLPGEQQTLSVGP-VENVAQLVTQPQLRDRLWW-PGALLTDS----AAKAKALKDYQHVAQLASWEAEA-DDDVAATIKSVRQQLL-NLNITGRLPVKLDPDFVRVDENSNP----PLVGD---YTLYTVQR-PVTITLLGAV--SGAGQLPWLAGRS---------VTDYLQDHPRL-AGADKNNVVIT-PEGETVVAPVALWNKRHVEPPPGSQL--WLGFSAHVLPEKYADLNDQIVSVL-TQRVPELEHHHHHH
:... ...:::::. .: ::: :::::::: ::::::::::::::::::::::: :::::::::::::::: ::::::::::. .:... ..::: :::::::: :::::::::: ::::::::::::: ::::::::::: :::: :::::: :::::::::::::::::::::::::: :::::::: ::::::::::::::: :::::::::::
MHRI--------------HSLLLAALFF---IV--FAAAEKKTLRCGTQVEFEEALINKKLDEMQRYYVSSFRACRFKKLCIRKRLRKLLWRRRNYKGSLDIT---------NPQNSMALWLPILKSGENRRGVPWRKRNTYQVVATCTNQTTCKLLSVTERTGGKKSTETACTEMKSNSNGVNLPAL-PSSIQNPPKGSLQIVPVPKKPGDRISNPSGLRVDTNLPIDSED-EDDFKTPRESFTDPINRNPFPRSPSAG---