Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_multi_HHsearch_TS1.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_multi_HHsearch_TS1.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 3f41A (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.56218904 (Target length: 201, Aligned residues: 113)
RMSD: 5.44
TM-score: 0.32827
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
PAVVKNPPKLALKIDRADVNQLPRNFRMGSDKYVGVT-------------------------------KTGIMPTRKGMDTMNVSASSCFSEKELEAILKKVPVKPSQFYDVDLRGESHGYLNGTAVSWFANHDWGNDGRTEDIIIPLEKEQLASLKGSTVKSIYRFDDKKNVILSPVYVNYNKVRTEEEMVKQHGANYFRLTLQDHFRPDDPDVDKFLEFYKSLPKDAWLHYHCYAGMGRTTIFMVMHDILKNAKDVSFDDIIQRQKLIGIVDLSEIPDKKKNYGRKAYIERYQFVQHFYDYVKENPDLKTPYSVWAKKNKVNSWEPDYNGYIWRLDT---KDRNQLPRNFRTMNSAFRTDVNVKKTGKGFTPTPTRKGLDTLYMSGSAEFSNGELQAMLPVLKQQAKGP-IYIMDLRQETHGVFNGNAVSWYGLRDWGNLGKNKAEVLKDENSRLNAARGKSLIVAELDKDKMPIDPKPVKIESVMTEQQLVEKNGLHYYRIAATDHIWPSAANIDEFINFTRTMP-ANAWLHFHCQAGAGRTTAYMAMYDMMKNPDVSLGDIL-----------SRQYL----LG-G--------N-Y-VAYEIAKPKPDQWKADYYHQKAHMIEKF--YQYVQENHADGFKTSWSQWLAA------------------------
..:: . .: . ::: ::::::::......:.. ::: .:::::. :. .. .:::: . .:: .. : : : :.:::: ::: :::: :.:. .:.. . .::::::.... ... .. . . : .:::. : .: .::: :.. .
-------------------------------------MRLLITTITTALLISSAVGEEAQLRRVLAQDESSS-H-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NT--V--------------------------------MHA-----------------------AVQDQITDSLGADSLASSNGGFD----------------------------------------------ANNAFLA-KR-HM-------DKPSEL-V-FSC-------VT-G---------------------------------Q-------N--KTITAK-FGM---VIDS-LTHA----------------------------CKAIG-------------------E-PGRVRAKWPYP-ATIEADNYTEHGPY--FVWKVGYRPPTQKRLALAANEKKSD--------A-ET-PHII-ATY--NCD---------------------LLDVVTEDLVSGKYEYCTRKWVEI
Jmol view of the structural alignment of the model (blue) with the template 2y26A (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.6119403 (Target length: 201, Aligned residues: 123)
RMSD: 4.03
TM-score: 0.43672
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
GLAGRGVIYIPKD--------------------------------------------------CQANRYLGTLNIRDMISDFKGVQYEKWITAGLVMPTFKIVIRL----PANAFTGLTWVMSFDAYNRITSRITASADPVYTLSVPHWLIHHKLGTF-SCEIDYG---ELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQAVVELYAELEEATSF----LGKPTLVFDPGVFN-----------GKFQ---FLTCP-PIFFDLTAVTALRSAGLTLGQVP-MVGTTKVYNLNSTLVSCVLGMGGTVRGRVHICAPIFYSIVLWVVSEWNGTTMDWNELFKYPGVYVEEDGSFEVKIRSPYHRTPARLLADQSQRDMSSLNFYAIAGPIAPSGETAQLPIVVQIDEIVRPDLSLPSFEDDYFVWVDFSEFTLDKEEIEIGSRFFDFTSNTCRVSMGENPFAAMIACHGLHSGVLDLKLQWSLNTEFGKSSGSVTITKLVGDKAMGLDGPSHVFAIQKLEGTTELLVGNFAGANPNTRFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFSFYGRTSFPV
..:. .::: ::::.:. ::. .:. .::::::::::::::::::::::::... ...::::::::::: :::: ::::: ::: :::::.::::: :::::::::::::::::: ::: ::::::::::::: : .:
-------------MRLLITTITTALLISSAVGEEAQLRRVLAQDESSSHNTVMHAAVQDQITDSLGA---------------------------------------DSLASSNG-------------------------------------GFDANNAFLAK----RHMDKP-------------SELVFSCVTGQNKTITAKFGMVIDSLTH-------ACKAIGEPGRVRAKWPYPATIEADNYTEHGPYFVWKVGYRPPTQK---------RLALAANEKKSDAETPHIIATYNCDLLDVV-TED-LVSGKYEYCTRKW-V---------------------------EI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------