Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_multi_HHsearch_TS1.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_multi_HHsearch_TS1.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 2g6vA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.4390244 (Target length: 164, Aligned residues: 72)
RMSD: 5.52
TM-score: 0.24528
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
TL-----------------------------------------------YIQGQDEYYARA-L-----KLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRAGEKAKGATAYVTLEPCPCCDALIAAGVARVVASQDPNPQVAGRGLYRLQQAGIDVSHGLSEAEQLNKGFLKRRTGFPYIQL-KLGASLDG-RTAESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLQLGKQQINSIWVEAGPTLA-----------GALLQAGLVDEL--------IV----YIAPKLLGSDARGLCTLPGPQFKFKEI--RHVGPDVCLHLVGA------------
.:. :::: :. . ...:::: . .: : :. ::: :::: ::::: . ..:. ::::::: : :: : :.:. ...:. .. .:::. .:::.
--MRFSSTAIIFQCASIFVKIVIGSSIDHIDEQSKSFDCDGIIVGHEQLSQK-RDLI-QR-PLIGSKPMTFSKIY--Q----EK------------------------------------------Y-------------------------------------------------YE--IVY---------LYQSPKKYVK-F-GYDDP--ARLSVFR-L--PK--M-------------------------LQSH-----------------------------------------------------------------------------------------QYGDVLVSYDFFVLED-------SERRACSILLQKMEQGKML----------------------GRKYTGP---------LEYKLCTIRQST
Jmol view of the structural alignment of the model (blue) with the template 3qpiA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.5487805 (Target length: 164, Aligned residues: 90)
RMSD: 3.78
TM-score: 0.39825
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
FTVFTGGDSGAWS-----------------------------------------------------ILSVAPVIGESLMAAS------HLAIAPSLS--TPWQLRGVASHARYVERA--EKIALTSVQAGLGRNEATRAALIPIRKSAAWWEMTQDERRAI-FEDKS-HHIAASLKYLPAIARQLYHCRDIGEPFDFLTWFEYA---------PEHATMFEDLVGVLRATEEWTYVEREVDIRLARA
..::..:. .::. ..:::::.:::::::::: ::::::::::::::::: ::::::::::...: ..:..:::: ::::: ::::::::::::. .:
-------------MRFSSTAIIFQCASIFVKIVIGSSIDHIDEQSKSFDCDGIIVGHEQLSQKRDLIQRPLIGS--------KPMTFSKIYQ-----EKYYEIVYLYQSPKKYVKFGYDDPARLSVFRLPKMLQSH-QYGDVLVSYDFFVL-EDSERRACSILLQKMEQGKMLGRKYTGPL-----------------------EYKLCTIRQST--------------------------------