Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_multi_HHsearch_TS1.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_multi_HHsearch_TS1.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 3d3kA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.2857143 (Target length: 112, Aligned residues: 32)
RMSD: 4.8
TM-score: 0.15529
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
YRRIIVPSKEFCTDSGLVVPSISYELHKKLLSV---------------------------------------------------------------------AEKH----GLTLE--RRLE--MTGVCASQMALTLL---GGPQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLRDQPWYKAAVAWANQNRAPVLSIDPPVHIDAKWSLALGLPLPLGEHAGRIYLCDIGIPQQVFQEVGINYHSPFGCKFVIPLHS
..:. ..::. .::: ..: :: ::: : ::. .:: :: ::
---------------------------------MKISLVASLVAILSNSMPTLALDGYNCLGQVLSHDLLTEEINLSYDKTVPQDPGNEFFTDSSISVPLVFSISFPQPDYPLTKVKILFNHRKQI-IA--VQA--FAWDKYF-----------------------NCE-----EI----------------------------------------IE-----------------------------------------------------------------------------------------------
Jmol view of the structural alignment of the model (blue) with the template 3ixzB (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.24107143 (Target length: 112, Aligned residues: 27)
RMSD: 2.97
TM-score: 0.17249
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
TL---------------------------------------------------------SRWVWISLYYVAFYVVMSGIFA-L-C-IYV---LMRTIDPY-TPDYQDQLK---------------------
.: :: :: :: :: :: : : . :: :::: :::::.
--MKISLVASLVAILSNSMPTLALDGYNCLGQVLSHDLLTEEINLSYDKTVPQDPGNEFFT--DS--SI--SV--PL--VFSISFPQ--PDYPL--TKVKILFNHRK---QIIAVQAFAWDKYFNCEEIIE