Links to interactive graphical output:
RasMol generated image of per-residue accuracy for the model nFOLD4_3c5ia_spk2_TS8.bfact.pdb
Click here to download a PDB file of this model with residue accuracy predictions (Angstroms) in the B-factor column.
[RasMol colouring uses the reverse rainbow scheme from blue (high accuracy)
through green, yellow and orange to red (low accuracy).]
Jmol view of the per-residue accuracy for the model nFOLD4_3c5ia_spk2_TS8.bfact.pdb
[Jmol colouring uses a gradient from blue (high accuracy)
through white to red (low accuracy).]
Jmol view of the structural alignment of the model (blue) with the template 3c5iA (red) using TM-align
Download the superposition file (RasMol script).
Coverage of target: 0.83384615 (Target length: 325, Aligned residues: 271)
RMSD: 2.5
TM-score: 0.76898
The alignment (template-model) is shown below:
(":" denotes the residue pairs of distance < 5.0 Angstrom)
LTDPLYIKKICLEKVPEWNHFTEDNLRV-------KQI--T-NQLFEVGL-------KEETANNYNSIRTRVLFR-IY---GK---HVDELYNTISEF-EVYKTMSKYKIAPQLLNTFNGGRIEE---WLYGDPLRIDDLKNPTILIGIANVL---GKFH-TLSRKRHLPEHWDRTPCIFKMMEK-W-KNQLFKYKNIEKYCDIHKYIKESDKFIKFMKVYSKSDNLANTIVFCHNDLQENNIINTNCLRLIDFEYSGFNFLATDIANFFIET-SIDYSVSSYPFFEIDKKKYISYENRKLFITAYLSNYLPTPKLIDEILEAVEVQALGAHLLWGFWSIIRGY-Q-T-KFDF---F---------LYAEQRLKMY----DDQKEYLISNNIIKGYD
... : :::... .. . ....::: :: :: :::::::::::: :::::::::::::::::::: ::::: ::::::::::::::::::::::::: :::: :::::::::::::::::::::::: : ::::: : : :: : : ::::::::::: :::: :::: :::: ::::::::::::: :::::::::::: :::::: :::::: ::::::::::::::::::::.:::::::::::::::::::::::::::::::: : : .::: : :::::::::: ::::::::::::::.
----------------------------MKFQSTALGVIISFYFYTIV--ATDGPGDYI--C------DKDYLLSDRISEYVRGSCKLLKFADISSKHPVTFDGSSHFGISDATLFATP-IRIDYMKKYTGGRNSGKNRIVIDSMCNLIGLVYVTNQSYKRCIKILDSIGESWSPYGTISNPVPKTYGYDCNS-----------K--I--VI--K--I--SRHIDMITSTE-LAEK-LLDK-HKTP-HRIAVDKDLVFMG-MMYRLGSEWKRCKHIEYVD----PEPPRS-LDPTKNSVGEHIFENVSAYKCDDVYISAITVNSHMQAACTSIFEDQRKISTAKRNYFVKFDLECNFLDVYVRSNNNYSRCQKDKSSLHPTKQRPTLTCLNLFPH--