The IntFOLD Server Results Page (Version 6.0)
Please cite the relevant papers:McGuffin, L.J., Adiyaman, R., Maghrabi, A.H.A., Shuid, A.N., Brackenridge, D.A., Nealon, J.O. & Philomina, L.S. (2019) IntFOLD: an integrated web resource for high performance protein structure and function prediction. Nucleic Acids Research, 47, W408-W413. DOI PubMed
McGuffin, L.J., Shuid, A.M., Kempster, R., Maghrabi, A.H.A., Nealon J.O., Salehe, B.R., Atkins, J.D. & Roche, D.B. (2017) Accurate Template Based Modelling in CASP12 using the IntFOLD4-TS, ModFOLD6 and ReFOLD methods. Proteins: Structure, Function, and Bioinformatics, 86 Suppl 1, 335-344, doi: 10.1002/prot.25360. PubMed
Links to graphical output:
- Top 5 3D models
- Disorder prediction
- Domain boundary prediction
- Binding site prediction
- Full model quality assessment results
Download machine readable results in CASP format:
- TS (Tertiary Structure Prediction)
- DR (Disorder Prediction)
- DP (Domain Prediction)
- FN (Binding Site Prediction)
- QA (Model Quality Prediction)
- Make a compressed file containing all generated 3D models (models are in PDB format with predicted per-residue errors in the B-factor column)
Results will be available for 21 days after job completion (subject to server capacity)
| Tertiary Structure Predictions: Top 5 multi-template 3D models for striatin-3 | Help | ||||
| Model ID and PDBsum links for all templates used | Confidence and P-value | Global model quality score | Local model quality plot (click images to download plots) | 3D map of model quality |
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IntFOLD6 IntFOLDTS60 multi2 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 IntFOLDTS60 multi1 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 HHsearch multi6 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 HHsearch multi2 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 COMA multi8 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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McGuffin, L. J. (2008) Intrinsic disorder prediction from the analysis of multiple protein fold recognition models. Bioinformatics, 24, 1789-1804. PubMed
| Disorder prediction for striatin-3 | Help | |||
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| Click image to download plot in PostScript format. |
| Domain boundary prediction for striatin-3 | Help | |||
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| Click image to download model or view prediction using Jmol. The model above is coloured according to the predicted domains. |
Roche, D. B., Tetchner, S. J. & McGuffin, L. J. (2011) FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins. BMC Bioinformatics, 12, 160. PubMed
| Ligand binding residues prediction for striatin-3 | Help | |||
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| No binding residues predicted. |
Maghrabi, A.H.A. & McGuffin L.J. (2017) ModFOLD6: an accurate web server for the global and local quality estimation of 3D models of proteins. Nucleic Acids Res., 45, W416-W421, doi: 10.1093/nar/gkx332. PubMed
| Full model quality assessment results for striatin-3 | Help | ||||
| Model ID and PDBsum links for all templates used | Confidence and P-value | Global model quality score | Local model quality plot (click images to download plots) | 3D map of model quality |
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IntFOLD6 IntFOLDTS60 multi2 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 IntFOLDTS60 multi1 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 HHsearch multi6 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 HHsearch multi2 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 COMA multi8 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 COMA multi7 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 COMA multi6 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 COMA multi5 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 COMA multi4 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 COMA multi3 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 COMA multi2 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 COMA multi1 TS1 4n6jA |
CERT: 1.705E-17 |
0.6858 |
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IntFOLD6 SPARKSX multi7 TS1 4n6jA |
CERT: 3.03E-17 |
0.6833 |
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IntFOLD6 SPARKSX multi6 TS1 4n6jA |
CERT: 3.03E-17 |
0.6833 |
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IntFOLD6 SPARKSX multi3 TS1 4n6jA |
CERT: 3.03E-17 |
0.6833 |
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IntFOLD6 SPARKSX multi2 TS1 4n6jA |
CERT: 3.03E-17 |
0.6833 |
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IntFOLD6 CNFsearch multi8 TS1 4n6jA 6f1tX |
CERT: 8.269E-17 |
0.6789 |
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IntFOLD6 CNFsearch multi5 TS1 4n6jA 6f1tX |
CERT: 8.269E-17 |
0.6789 |
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IntFOLD6 CNFsearch multi4 TS1 4n6jA 4wheA |
CERT: 1.325E-16 |
0.6768 |
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IntFOLD6 CNFsearch multi1 TS1 4n6jA 4wheA |
CERT: 1.325E-16 |
0.6768 |
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IntFOLD6 HHpred TS2 4n6jA |
CERT: 1.995E-16 |
0.6750 |
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IntFOLD6 IT5 TS1 |
CERT: 3.246E-16 |
0.6728 |
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IntFOLD6 HHpred TS3 4n6jA |
CERT: 4.597E-16 |
0.6713 |
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IntFOLD6 IntFOLDTS60 multi3 TS1 4n6jA 4zqaA |
CERT: 4.936E-16 |
0.6710 |
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IntFOLD6 HHsearch multi7 TS1 4n6jA 4zqaA |
CERT: 4.936E-16 |
0.6710 |
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IntFOLD6 HHsearch multi3 TS1 4n6jA 4zqaA |
CERT: 4.936E-16 |
0.6710 |
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IntFOLD6 IntFOLDTS60 multi4 TS1 4n6jA 4e40A |
CERT: 7.557E-16 |
0.6691 |
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IntFOLD6 wdPPAS multi8 TS1 3he5A 2x7aA |
CERT: 8.961E-16 |
0.6684 |
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IntFOLD6 wdPPAS multi5 TS1 3he5A 2x7aA |
CERT: 8.961E-16 |
0.6684 |
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IntFOLD6 HHpred TS1 4n6jA |
CERT: 1.263E-15 |
0.6669 |
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IntFOLD6 wMUSTER multi3 TS1 4n6jA 5vr2A 2oqqA 3he5A |
CERT: 1.806E-15 |
0.6653 |
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IntFOLD6 HHsearch multi1 TS1 4n6jA 4e29A |
CERT: 2.454E-15 |
0.6639 |
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IntFOLD6 IntFOLDTS140 multi3 TS1 2x7aA 3he5A 4pxjA 5al6A 5kb0A 4zqaA |
CERT: 2.906E-15 |
0.6632 |
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IntFOLD6 spk2 multi5 TS1 3he5B 1y66A |
CERT: 2.931E-15 |
0.6632 |
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IntFOLD6 PPAS multi7 TS1 6h9mA2 3he5A 5al6A |
CERT: 3.451E-15 |
0.6624 |
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IntFOLD6 MUSTER multi3 TS1 4n6jA 5vr2A 3he5A |
CERT: 3.524E-15 |
0.6623 |
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IntFOLD6 HHsearch multi8 TS1 4n6jA 4ywzA |
CERT: 3.699E-15 |
0.6621 |
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IntFOLD6 HHsearch multi4 TS1 4n6jA 4ywzA |
CERT: 3.699E-15 |
0.6621 |
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IntFOLD6 CNFsearch multi7 TS1 4n6jA |
CERT: 3.706E-15 |
0.6621 |
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IntFOLD6 CNFsearch multi6 TS1 4n6jA |
CERT: 3.706E-15 |
0.6621 |
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IntFOLD6 CNFsearch multi3 TS1 4n6jA |
CERT: 3.706E-15 |
0.6621 |
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IntFOLD6 CNFsearch multi2 TS1 4n6jA |
CERT: 3.706E-15 |
0.6621 |
 |
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IntFOLD6 SPARKSX multi8 TS1 4n6jA 5vnyA |
CERT: 3.888E-15 |
0.6619 |
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IntFOLD6 SPARKSX multi5 TS1 4n6jA 5vnyA |
CERT: 3.888E-15 |
0.6619 |
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IntFOLD6 SPARKSX multi1 TS1 4n6jA 4hb1A |
CERT: 3.936E-15 |
0.6619 |
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IntFOLD6 wPPAS multi7 TS1 5vr2A 4pxjA |
CERT: 4.931E-15 |
0.6609 |
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IntFOLD6 sp3 multi3 TS1 4n6jA 2oqqA 3he5B 3he4A |
CERT: 5.354E-15 |
0.6605 |
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IntFOLD6 wdPPAS multi6 TS1 3he5A |
CERT: 5.438E-15 |
0.6604 |
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IntFOLD6 wPPAS multi4 TS1 4n6jA 5vr2A |
CERT: 7.47E-15 |
0.6590 |
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IntFOLD6 wPPAS multi1 TS1 4n6jA 5vr2A |
CERT: 7.47E-15 |
0.6590 |
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IntFOLD6 wMUSTER multi4 TS1 4n6jA 5vr2A |
CERT: 7.47E-15 |
0.6590 |
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IntFOLD6 wMUSTER multi1 TS1 4n6jA 5vr2A |
CERT: 7.47E-15 |
0.6590 |
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IntFOLD6 spk2 multi7 TS1 3he5B 3he4A |
CERT: 9.993E-15 |
0.6578 |
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IntFOLD6 sp3 multi7 TS1 3he5B 3he4A |
CERT: 9.993E-15 |
0.6578 |
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IntFOLD6 sp3 multi5 TS1 3he5B 3he4A |
CERT: 9.993E-15 |
0.6578 |
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IntFOLD6 wPPAS multi3 TS1 4n6jA 5vr2A 2oqqA 4pxjA |
CERT: 1.175E-14 |
0.6570 |
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IntFOLD6 LOMETS multi3 TS1 4n6jA 5vr2A |
CERT: 1.213E-14 |
0.6569 |
 |
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IntFOLD6 dPPAS multi3 TS1 4n6jA 5vr2A 2oqqA 3he5A 5al6A 5kb0A |
CERT: 2.563E-14 |
0.6536 |
 |
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IntFOLD6 SPARKSX multi4 TS1 4n6jA 4djgA |
CERT: 2.997E-14 |
0.6529 |
 |
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IntFOLD6 dPPAS2 multi7 TS1 5vr2A 6h9mA2 3he5A 4pxjA 5al6A 5kb0A |
CERT: 3.231E-14 |
0.6526 |
 |
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IntFOLD6 wMUSTER multi8 TS1 6h9mA2 |
CERT: 3.918E-14 |
0.6517 |
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IntFOLD6 wMUSTER multi6 TS1 6h9mA2 |
CERT: 3.918E-14 |
0.6517 |
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IntFOLD6 PPAS multi8 TS1 6h9mA2 |
CERT: 3.918E-14 |
0.6517 |
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IntFOLD6 PPAS multi6 TS1 6h9mA2 |
CERT: 3.918E-14 |
0.6517 |
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IntFOLD6 MUSTER multi8 TS1 6h9mA2 |
CERT: 3.918E-14 |
0.6517 |
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IntFOLD6 MUSTER multi6 TS1 6h9mA2 |
CERT: 3.918E-14 |
0.6517 |
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IntFOLD6 dPPAS multi8 TS1 6h9mA2 |
CERT: 3.918E-14 |
0.6517 |
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IntFOLD6 dPPAS multi6 TS1 6h9mA2 |
CERT: 3.918E-14 |
0.6517 |
 |
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IntFOLD6 wdPPAS multi4 TS1 4n6jA 5vr2A |
CERT: 6.144E-14 |
0.6498 |
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IntFOLD6 wdPPAS multi1 TS1 4n6jA 5vr2A |
CERT: 6.144E-14 |
0.6498 |
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IntFOLD6 PPAS multi4 TS1 4n6jA 5vr2A |
CERT: 6.144E-14 |
0.6498 |
 |
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IntFOLD6 PPAS multi1 TS1 4n6jA 5vr2A |
CERT: 6.144E-14 |
0.6498 |
 |
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IntFOLD6 MUSTER multi4 TS1 4n6jA 5vr2A |
CERT: 6.144E-14 |
0.6498 |
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IntFOLD6 MUSTER multi1 TS1 4n6jA 5vr2A |
CERT: 6.144E-14 |
0.6498 |
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IntFOLD6 LOMETS multi4 TS1 4n6jA 5vr2A |
CERT: 6.144E-14 |
0.6498 |
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IntFOLD6 dPPAS multi4 TS1 4n6jA 5vr2A |
CERT: 6.144E-14 |
0.6498 |
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IntFOLD6 dPPAS multi1 TS1 4n6jA 5vr2A |
CERT: 6.144E-14 |
0.6498 |
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IntFOLD6 dPPAS2 multi4 TS1 4n6jA 5vr2A |
CERT: 6.144E-14 |
0.6498 |
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IntFOLD6 dPPAS2 multi1 TS1 4n6jA 5vr2A |
CERT: 6.144E-14 |
0.6498 |
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IntFOLD6 wMUSTER multi7 TS1 6h9mA2 3he5A |
CERT: 6.92E-14 |
0.6492 |
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IntFOLD6 wMUSTER multi5 TS1 6h9mA2 3he5A |
CERT: 6.92E-14 |
0.6492 |
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IntFOLD6 PPAS multi5 TS1 6h9mA2 3he5A |
CERT: 6.92E-14 |
0.6492 |
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IntFOLD6 MUSTER multi7 TS1 6h9mA2 3he5A |
CERT: 6.92E-14 |
0.6492 |
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IntFOLD6 MUSTER multi5 TS1 6h9mA2 3he5A |
CERT: 6.92E-14 |
0.6492 |
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IntFOLD6 dPPAS multi5 TS1 6h9mA2 3he5A |
CERT: 6.92E-14 |
0.6492 |
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IntFOLD6 sp3 multi1 TS1 4n6jA 2oqqA |
CERT: 6.936E-14 |
0.6492 |
 |
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IntFOLD6 wPPAS multi8 TS1 5vr2A |
CERT: 9.769E-14 |
0.6477 |
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IntFOLD6 wPPAS multi6 TS1 5vr2A |
CERT: 9.769E-14 |
0.6477 |
 |
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IntFOLD6 dPPAS2 multi8 TS1 5vr2A |
CERT: 9.769E-14 |
0.6477 |
 |
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IntFOLD6 dPPAS2 multi6 TS1 5vr2A |
CERT: 9.769E-14 |
0.6477 |
 |
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IntFOLD6 dPPAS2 multi5 TS1 5vr2A 6h9mA2 |
CERT: 1.219E-13 |
0.6467 |
 |
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IntFOLD6 PPAS multi3 TS1 4n6jA 5vr2A 2oqqA 4pkyB 6h9mA2 3he5A 5al6A |
CERT: 1.523E-13 |
0.6458 |
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IntFOLD6 spk2 multi8 TS1 3he5B |
CERT: 1.971E-13 |
0.6446 |
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IntFOLD6 spk2 multi6 TS1 3he5B |
CERT: 1.971E-13 |
0.6446 |
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IntFOLD6 sp3 multi8 TS1 3he5B |
CERT: 1.971E-13 |
0.6446 |
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IntFOLD6 sp3 multi6 TS1 3he5B |
CERT: 1.971E-13 |
0.6446 |
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IntFOLD6 HHsearch multi5 TS1 4n6jA 3b8mA |
CERT: 2.921E-13 |
0.6429 |
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IntFOLD6 wPPAS multi5 TS1 5vr2A 5f5sB |
CERT: 3.051E-13 |
0.6427 |
 |
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IntFOLD6 wdPPAS multi3 TS1 4n6jA 5vr2A 2oqqA 5kb0A 4pxjA 5al6A |
CERT: 3.148E-13 |
0.6426 |
 |
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IntFOLD6 wdPPAS multi7 TS1 3he5A 4pxjA 5al6A 5kb0A |
CERT: 1.867E-12 |
0.6347 |
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IntFOLD6 IntFOLDTS140 multi4 TS1 2x7aA 6h9mA2 |
CERT: 1.903E-12 |
0.6346 |
 |
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IntFOLD6 IntFOLDTS140 multi1 TS1 2x7aA 6h9mA2 |
CERT: 1.903E-12 |
0.6346 |
 |
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IntFOLD6 IntFOLDTS140 multi2 TS1 2x7aA |
CERT: 2.033E-12 |
0.6343 |
 |
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IntFOLD6 dPPAS2 multi3 TS1 4n6jA 5vr2A 4pxjA 5al6A |
CERT: 4.966E-12 |
0.6304 |
 |
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IntFOLD6 dPPAS multi7 TS1 6h9mA2 3he5A 5al6A 5kb0A |
CERT: 6.935E-12 |
0.6289 |
 |
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IntFOLD6 spk2 multi4 TS1 4n6jA 3he5B |
CERT: 3.456E-11 |
0.6219 |
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IntFOLD6 spk2 multi1 TS1 4n6jA 3he5B |
CERT: 3.456E-11 |
0.6219 |
 |
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IntFOLD6 spk2 multi3 TS1 4n6jA 3he5B 3he4A |
CERT: 6.431E-11 |
0.6191 |
 |
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IntFOLD6 sp3 multi4 TS1 4n6jA 3he5B |
CERT: 8.136E-11 |
0.6181 |
 |
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IntFOLD6 sp3 multi2 TS1 4n6jA |
CERT: 1.281E-7 |
0.5857 |
 |
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IntFOLD6 wPPAS multi2 TS1 4n6jA |
CERT: 2.045E-7 |
0.5836 |
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IntFOLD6 wMUSTER multi2 TS1 4n6jA |
CERT: 2.045E-7 |
0.5836 |
 |
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IntFOLD6 wdPPAS multi2 TS1 4n6jA |
CERT: 1.815E-6 |
0.5740 |
 |
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IntFOLD6 PPAS multi2 TS1 4n6jA |
CERT: 1.815E-6 |
0.5740 |
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IntFOLD6 MUSTER multi2 TS1 4n6jA |
CERT: 1.815E-6 |
0.5740 |
 |
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IntFOLD6 LOMETS multi2 TS1 4n6jA |
CERT: 1.815E-6 |
0.5740 |
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IntFOLD6 LOMETS multi1 TS1 4n6jA |
CERT: 1.815E-6 |
0.5740 |
 |
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IntFOLD6 Env-PPAS multi7 TS1 4n6jA |
CERT: 1.815E-6 |
0.5740 |
 |
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IntFOLD6 Env-PPAS multi6 TS1 4n6jA |
CERT: 1.815E-6 |
0.5740 |
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IntFOLD6 Env-PPAS multi3 TS1 4n6jA |
CERT: 1.815E-6 |
0.5740 |
 |
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IntFOLD6 Env-PPAS multi2 TS1 4n6jA |
CERT: 1.815E-6 |
0.5740 |
 |
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IntFOLD6 dPPAS multi2 TS1 4n6jA |
CERT: 1.815E-6 |
0.5740 |
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IntFOLD6 dPPAS2 multi2 TS1 4n6jA |
CERT: 1.815E-6 |
0.5740 |
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IntFOLD6 Env-PPAS multi8 TS1 4n6jA 3bbnO |
CERT: 3.187E-6 |
0.5715 |
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IntFOLD6 Env-PPAS multi5 TS1 4n6jA 3bbnO |
CERT: 3.187E-6 |
0.5715 |
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IntFOLD6 spk2 multi2 TS1 4n6jA |
CERT: 3.504E-5 |
0.5610 |
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IntFOLD6 DMPf TS1 |
CERT: 9.514E-4 |
0.5464 |
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IntFOLD6 Env-PPAS multi4 TS1 4n6jA 5oeuA2 |
MEDIUM: 3.451E-2 |
0.5004 |
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IntFOLD6 Env-PPAS multi1 TS1 4n6jA 5oeuA2 |
MEDIUM: 3.451E-2 |
0.5004 |
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