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The IntFOLD Server Results Page (Version 6.0)

Please cite the relevant papers:

McGuffin, L.J., Adiyaman, R., Maghrabi, A.H.A., Shuid, A.N., Brackenridge, D.A., Nealon, J.O. & Philomina, L.S. (2019) IntFOLD: an integrated web resource for high performance protein structure and function prediction. Nucleic Acids Research, 47, W408-W413. DOI PubMed

McGuffin, L.J., Shuid, A.M., Kempster, R., Maghrabi, A.H.A., Nealon J.O., Salehe, B.R., Atkins, J.D. & Roche, D.B. (2017) Accurate Template Based Modelling in CASP12 using the IntFOLD4-TS, ModFOLD6 and ReFOLD methods. Proteins: Structure, Function, and Bioinformatics, 86 Suppl 1, 335-344, doi: 10.1002/prot.25360. PubMed

Links to graphical output:
Download machine readable results in CASP format:
Results will be available for 21 days after job completion (subject to server capacity)

Tertiary Structure Predictions: Top 5 multi-template 3D models for MAP4K4_351-494 | Help
Model ID and
PDBsum links for all templates used
Confidence
and P-value
Global model quality score Local model quality plot
(click images to download plots)
3D map of model quality
IntFOLD6
IT5
TS1

CERT:
1.026E-10
0.6171



IntFOLD6
MUSTER
multi8
TS1

6f1tX
CERT:
4.969E-10
0.6101



IntFOLD6
MUSTER
multi6
TS1

6f1tX
CERT:
4.969E-10
0.6101



IntFOLD6
MUSTER
multi4
TS1

6f1tX
CERT:
4.969E-10
0.6101



IntFOLD6
MUSTER
multi2
TS1

6f1tX
CERT:
4.969E-10
0.6101



Disorder prediction is carried out using DISOclust:
McGuffin, L. J. (2008) Intrinsic disorder prediction from the analysis of multiple protein fold recognition models. Bioinformatics, 24, 1789-1804. PubMed
Disorder prediction for MAP4K4_351-494 | Help
Click image to download plot in PostScript format.
Domain boundary prediction for MAP4K4_351-494 | Help
Click image to download model or view prediction using Jmol. The model above is coloured according to the predicted domains.
Ligand binding site prediction is carried out using FunFOLD:
Roche, D. B., Tetchner, S. J. & McGuffin, L. J. (2011) FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins. BMC Bioinformatics, 12, 160. PubMed
Ligand binding residues prediction for MAP4K4_351-494 | Help
No binding residues predicted.
Model quality assessment is carried out using ModFOLD:
Maghrabi, A.H.A. & McGuffin L.J. (2017) ModFOLD6: an accurate web server for the global and local quality estimation of 3D models of proteins. Nucleic Acids Res., 45, W416-W421, doi: 10.1093/nar/gkx332. PubMed
Full model quality assessment results for MAP4K4_351-494 | Help
Model ID and
PDBsum links for all templates used
Confidence
and P-value
Global model quality score Local model quality plot
(click images to download plots)
3D map of model quality
IntFOLD6
IT5
TS1

CERT:
1.026E-10
0.6171



IntFOLD6
MUSTER
multi8
TS1

6f1tX
CERT:
4.969E-10
0.6101



IntFOLD6
MUSTER
multi6
TS1

6f1tX
CERT:
4.969E-10
0.6101



IntFOLD6
MUSTER
multi4
TS1

6f1tX
CERT:
4.969E-10
0.6101



IntFOLD6
MUSTER
multi2
TS1

6f1tX
CERT:
4.969E-10
0.6101



IntFOLD6
LOMETS
multi4
TS1

6f1tX
CERT:
4.969E-10
0.6101



IntFOLD6
LOMETS
multi2
TS1

6f1tX
CERT:
4.969E-10
0.6101



IntFOLD6
SPARKSX
multi7
TS1

2v71B
CERT:
6.233E-10
0.6091



IntFOLD6
SPARKSX
multi6
TS1

2v71B
CERT:
6.233E-10
0.6091



IntFOLD6
IT5
TS3

CERT:
6.938E-10
0.6087



IntFOLD6
SPARKSX
multi5
TS1

2v71B
2otoB
CERT:
1.47E-9
0.6053



IntFOLD6
wPPAS
multi8
TS1

6f1tX1
5hmoA
CERT:
2.403E-9
0.6032



IntFOLD6
wPPAS
multi5
TS1

6f1tX1
5hmoA
CERT:
2.403E-9
0.6032



IntFOLD6
IT5
TS2

CERT:
2.783E-9
0.6025



IntFOLD6
IntFOLDTS60
multi1
TS1

6f1tX
2otoB
CERT:
4.03E-9
0.6009



IntFOLD6
LOMETS
multi1
TS1

6f1tX
5hmoA
CERT:
4.691E-9
0.6002



IntFOLD6
wMUSTER
multi5
TS1

6l5jA
5hmoA
CERT:
7.253E-9
0.5983



IntFOLD6
IntFOLDTS60
multi3
TS1

6f1tX
2otoB
1gmjA
3k6tA
2pq4B
4wwrA
3tweA
CERT:
8.232E-9
0.5978



IntFOLD6
SPARKSX
multi8
TS1

2v71B
5tvbA
6uxvC
CERT:
8.452E-9
0.5976



IntFOLD6
IntFOLDTS140
multi4
TS1

6f1tX1
6f1tX
6uxvC
CERT:
1.202E-8
0.5961



IntFOLD6
wMUSTER
multi8
TS1

6l5jA
CERT:
1.343E-8
0.5956



IntFOLD6
wMUSTER
multi6
TS1

6l5jA
CERT:
1.343E-8
0.5956



IntFOLD6
DMPf
TS3

CERT:
1.346E-8
0.5956



IntFOLD6
IntFOLDTS60
multi2
TS1

6f1tX
CERT:
1.767E-8
0.5944



IntFOLD6
IntFOLDTS60
multi4
TS1

6f1tX
2v71B
5tvbA
6uxvC
CERT:
2.251E-8
0.5933



IntFOLD6
wdPPAS
multi5
TS1

6f1tX1
5hmoA
CERT:
3.372E-8
0.5915



IntFOLD6
wMUSTER
multi4
TS1

6f1tX
CERT:
7.27E-8
0.5882



IntFOLD6
wMUSTER
multi2
TS1

6f1tX
CERT:
7.27E-8
0.5882



IntFOLD6
DMPf
TS4

CERT:
7.61E-8
0.5880



IntFOLD6
wMUSTER
multi1
TS1

6f1tX
6l5jA
CERT:
1.161E-7
0.5861



IntFOLD6
IntFOLDTS140
multi2
TS1

6f1tX1
CERT:
1.172E-7
0.5861



IntFOLD6
IntFOLDTS140
multi1
TS1

6f1tX1
CERT:
1.172E-7
0.5861



IntFOLD6
dPPAS
multi7
TS1

6f1tX1
CERT:
1.172E-7
0.5861



IntFOLD6
dPPAS
multi6
TS1

6f1tX1
CERT:
1.172E-7
0.5861



IntFOLD6
dPPAS2
multi7
TS1

6f1tX1
CERT:
1.172E-7
0.5861



IntFOLD6
dPPAS2
multi6
TS1

6f1tX1
CERT:
1.172E-7
0.5861



IntFOLD6
IntFOLDTS140
multi3
TS1

6f1tX1
6obiA
1gmjA
3tweA
4wwrA
2pq4B
CERT:
1.696E-7
0.5844



IntFOLD6
wPPAS
multi6
TS1

6f1tX1
CERT:
2.736E-7
0.5823



IntFOLD6
dPPAS
multi5
TS1

6f1tX1
5hmoA
CERT:
6.474E-7
0.5785



IntFOLD6
wdPPAS
multi6
TS1

6f1tX1
CERT:
1.243E-6
0.5757



IntFOLD6
wdPPAS
multi7
TS1

6f1tX1
6obiA
CERT:
1.403E-6
0.5751



IntFOLD6
PPAS
multi6
TS1

6f1tX1
CERT:
1.416E-6
0.5751



IntFOLD6
dPPAS
multi4
TS1

5hmoA
4mh6A
CERT:
2.677E-6
0.5723



IntFOLD6
dPPAS
multi1
TS1

5hmoA
4mh6A
CERT:
2.677E-6
0.5723



IntFOLD6
dPPAS
multi2
TS1

5hmoA
CERT:
5.98E-6
0.5687



IntFOLD6
SPARKSX
multi1
TS1

3k29A
6f1tX
CERT:
9.074E-6
0.5669



IntFOLD6
SPARKSX
multi2
TS1

3k29A
CERT:
1.396E-5
0.5650



IntFOLD6
DMPf
TS1

CERT:
2.062E-5
0.5633



IntFOLD6
dPPAS
multi3
TS1

5hmoA
4mh6A
6f1tX1
CERT:
2.328E-5
0.5628



IntFOLD6
DMPf
TS2

CERT:
2.493E-5
0.5625



IntFOLD6
dPPAS2
multi8
TS1

6f1tX1
4mh6A
CERT:
5.825E-5
0.5587



IntFOLD6
dPPAS2
multi5
TS1

6f1tX1
4mh6A
CERT:
5.825E-5
0.5587



IntFOLD6
MUSTER
multi7
TS1

6f1tX
4mh6A
CERT:
7.429E-5
0.5576



IntFOLD6
MUSTER
multi3
TS1

6f1tX
4mh6A
CERT:
7.429E-5
0.5576



IntFOLD6
MUSTER
multi1
TS1

6f1tX
4mh6A
CERT:
7.429E-5
0.5576



IntFOLD6
LOMETS
multi3
TS1

6f1tX
4mh6A
CERT:
7.429E-5
0.5576



IntFOLD6
PPAS
multi4
TS1

4mh6A
CERT:
1.34E-4
0.5550



IntFOLD6
PPAS
multi3
TS1

4mh6A
CERT:
1.34E-4
0.5550



IntFOLD6
PPAS
multi2
TS1

4mh6A
CERT:
1.34E-4
0.5550



IntFOLD6
wPPAS
multi3
TS1

4mh6A
CERT:
3.518E-4
0.5508



IntFOLD6
wPPAS
multi2
TS1

4mh6A
CERT:
3.518E-4
0.5508



IntFOLD6
COMA
multi6
TS1

2zuoA
CERT:
8.817E-4
0.5467



IntFOLD6
wPPAS
multi1
TS1

4mh6A
5hmoA
HIGH:
2.348E-3
0.5393



IntFOLD6
dPPAS
multi8
TS1

6f1tX1
5hmoA
4mh6A
HIGH:
3.82E-3
0.5352



IntFOLD6
SPARKSX
multi3
TS1

3k29A
6f1tX
2otoB
2v71B
HIGH:
4.229E-3
0.5343



IntFOLD6
spk2
multi8
TS1

4mh6A
HIGH:
4.7E-3
0.5332



IntFOLD6
spk2
multi7
TS1

4mh6A
HIGH:
4.7E-3
0.5332



IntFOLD6
spk2
multi6
TS1

4mh6A
HIGH:
4.7E-3
0.5332



IntFOLD6
PPAS
multi1
TS1

4mh6A
5hmoA
HIGH:
5.47E-3
0.5317



IntFOLD6
MUSTER
multi5
TS1

6f1tX
5c21A
HIGH:
7.686E-3
0.5277



IntFOLD6
PPAS
multi8
TS1

6f1tX1
4mh6A
HIGH:
8.709E-3
0.5261



IntFOLD6
PPAS
multi7
TS1

6f1tX1
4mh6A
HIGH:
8.709E-3
0.5261



IntFOLD6
PPAS
multi5
TS1

6f1tX1
4mh6A
HIGH:
8.709E-3
0.5261



IntFOLD6
SPARKSX
multi4
TS1

3k29A
6f1tX
5tvbA
6uxvC
MEDIUM:
1.089E-2
0.5230



IntFOLD6
COMA
multi7
TS1

2zuoA
2qagB
MEDIUM:
1.264E-2
0.5208



IntFOLD6
spk2
multi5
TS1

4mh6A
3k29A
MEDIUM:
1.386E-2
0.5193



IntFOLD6
wdPPAS
multi1
TS1

6snyA
5hmoA
MEDIUM:
2.21E-2
0.5107



IntFOLD6
wPPAS
multi7
TS1

6f1tX1
5tvbA
4mh6A
MEDIUM:
2.236E-2
0.5104



IntFOLD6
wdPPAS
multi8
TS1

6f1tX1
5hmoA
4mh6A
MEDIUM:
2.391E-2
0.5090



IntFOLD6
spk2
multi3
TS1

2nsaA
3k29A
4mh6A
MEDIUM:
3.13E-2
0.5028



IntFOLD6
dPPAS2
multi1
TS1

6snyA
5hmoA
MEDIUM:
4.396E-2
0.4938



IntFOLD6
wMUSTER
multi7
TS1

6l5jA
4mh6A
MEDIUM:
4.728E-2
0.4917



IntFOLD6
wPPAS
multi4
TS1

4mh6A
4tqlA1
LOW:
5.198E-2
0.4888



IntFOLD6
wdPPAS
multi2
TS1

6snyA
LOW:
5.236E-2
0.4885



IntFOLD6
CNFsearch
multi3
TS1

1jchA
5j1iA
6f1tX
LOW:
5.419E-2
0.4874



IntFOLD6
CNFsearch
multi7
TS1

1jchA
5j1iA
4l1bB
LOW:
5.584E-2
0.4866



IntFOLD6
dPPAS2
multi2
TS1

6snyA
LOW:
6.482E-2
0.4828



IntFOLD6
spk2
multi4
TS1

2nsaA
LOW:
7.313E-2
0.4794



IntFOLD6
spk2
multi2
TS1

2nsaA
LOW:
7.313E-2
0.4794



IntFOLD6
CNFsearch
multi5
TS1

1jchA
6f1tX
LOW:
7.519E-2
0.4786



IntFOLD6
CNFsearch
multi8
TS1

1jchA
LOW:
7.592E-2
0.4783



IntFOLD6
CNFsearch
multi6
TS1

1jchA
LOW:
7.592E-2
0.4783



IntFOLD6
CNFsearch
multi4
TS1

1jchA
LOW:
7.592E-2
0.4783



IntFOLD6
CNFsearch
multi2
TS1

1jchA
LOW:
7.592E-2
0.4783



IntFOLD6
wdPPAS
multi4
TS1

6snyA
5hmoA
4mh6A
UNCERT:
1.039E-1
0.4670



IntFOLD6
dPPAS2
multi4
TS1

6snyA
5hmoA
4mh6A
UNCERT:
1.126E-1
0.4635



IntFOLD6
wMUSTER
multi3
TS1

6f1tX
6l5jA
4mh6A
UNCERT:
1.41E-1
0.4515



IntFOLD6
spk2
multi1
TS1

2nsaA
3k29A
UNCERT:
1.597E-1
0.4436



IntFOLD6
wdPPAS
multi3
TS1

6snyA
5hmoA
4mh6A
6f1tX1
6obiA
UNCERT:
1.665E-1
0.4406



IntFOLD6
dPPAS2
multi3
TS1

6snyA
5hmoA
4mh6A
5wsuC
UNCERT:
1.832E-1
0.4338



IntFOLD6
COMA
multi4
TS1

2qagB
5c8jI
2zuoA
2qagC
UNCERT:
2.112E-1
0.4232



IntFOLD6
COMA
multi8
TS1

2zuoA
2qagC
UNCERT:
2.193E-1
0.4204



IntFOLD6
COMA
multi5
TS1

2zuoA
2qagC
UNCERT:
2.193E-1
0.4204



IntFOLD6
CNFsearch
multi1
TS1

1jchA
4uxvA
UNCERT:
2.237E-1
0.4190



IntFOLD6
Env-PPAS
multi6
TS1

4x6gA1
UNCERT:
2.715E-1
0.4048



IntFOLD6
HHpred
TS3

3k6tA
1m0fB
2pq4B
3lcnC
1psbC
5firB
UNCERT:
2.773E-1
0.4033



IntFOLD6
Env-PPAS
multi5
TS1

4x6gA1
5z4yA
UNCERT:
2.851E-1
0.4013



IntFOLD6
Env-PPAS
multi7
TS1

4x6gA1
3whpA1
UNCERT:
2.959E-1
0.3987



IntFOLD6
HHpred
TS2

3k6tA
1m0fB
2pq4B
3lcnC
1psbC
5firB
UNCERT:
3.023E-1
0.3972



IntFOLD6
Env-PPAS
multi3
TS1

5fo5A
4x6gA1
3whpA1
UNCERT:
3.034E-1
0.3969



IntFOLD6
Env-PPAS
multi2
TS1

5fo5A
UNCERT:
3.189E-1
0.3934



IntFOLD6
Env-PPAS
multi1
TS1

5fo5A
5z4yA
UNCERT:
3.218E-1
0.3927



IntFOLD6
HHsearch
multi8
TS1

1gmjA
3htuB
4wwrA
3tweA
2pq4B
5firB
UNCERT:
3.337E-1
0.3901



IntFOLD6
HHpred
TS1

3k6tA
1m0fB
2pq4B
3lcnC
1psbC
5firB
UNCERT:
3.439E-1
0.3880



IntFOLD6
HHsearch
multi7
TS1

1gmjA
4wwrA
3tweA
UNCERT:
3.798E-1
0.3808



IntFOLD6
HHsearch
multi4
TS1

4dnnA
3tweA
3htuB
2xa6A
2pq4B
5firB
UNCERT:
3.892E-1
0.3790



IntFOLD6
Env-PPAS
multi8
TS1

4x6gA1
5fo5A
5y9sA1
5ze9A3
UNCERT:
4.141E-1
0.3745



IntFOLD6
Env-PPAS
multi4
TS1

5fo5A
1inpA1
UNCERT:
4.751E-1
0.3638



IntFOLD6
HHsearch
multi5
TS1

1gmjA
3htuB
UNCERT:
5.256E-1
0.3554



IntFOLD6
COMA
multi1
TS1

2qagB
5c8jI
UNCERT:
5.431E-1
0.3526



IntFOLD6
HHsearch
multi6
TS1

1gmjA
UNCERT:
5.879E-1
0.3453



IntFOLD6
COMA
multi3
TS1

2qagB
UNCERT:
6.979E-1
0.3268



IntFOLD6
COMA
multi2
TS1

2qagB
UNCERT:
6.979E-1
0.3268



IntFOLD6
HHsearch
multi3
TS1

4dnnA
3k6tA
4wwrA
UNCERT:
7.491E-1
0.3174



IntFOLD6
sp3
multi6
TS1

6yxqA
UNCERT:
7.609E-1
0.3152



IntFOLD6
sp3
multi4
TS1

6uieA
UNCERT:
7.757E-1
0.3122



IntFOLD6
sp3
multi2
TS1

6uieA
UNCERT:
7.757E-1
0.3122



IntFOLD6
HHsearch
multi2
TS1

4dnnA
UNCERT:
8.069E-1
0.3058



IntFOLD6
HHsearch
multi1
TS1

4dnnA
3k6tA
UNCERT:
8.084E-1
0.3054



IntFOLD6
sp3
multi8
TS1

6yxqA
6zkaZ
UNCERT:
8.993E-1
0.2818



IntFOLD6
sp3
multi5
TS1

6yxqA
6v4mA
UNCERT:
9.592E-1
0.2564



IntFOLD6
sp3
multi7
TS1

6yxqA
6v4mA
6zkaZ
UNCERT:
9.636E-1
0.2537



IntFOLD6
sp3
multi3
TS1

6uieA
6zkaZ
UNCERT:
9.829E-1
0.2388



IntFOLD6
sp3
multi1
TS1

6uieA
6zkaZ
UNCERT:
9.829E-1
0.2388



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