The IntFOLD Server Results Page (Version 6.0)
Please cite the relevant papers:McGuffin, L.J., Adiyaman, R., Maghrabi, A.H.A., Shuid, A.N., Brackenridge, D.A., Nealon, J.O. & Philomina, L.S. (2019) IntFOLD: an integrated web resource for high performance protein structure and function prediction. Nucleic Acids Research, 47, W408-W413. DOI PubMed
McGuffin, L.J., Shuid, A.M., Kempster, R., Maghrabi, A.H.A., Nealon J.O., Salehe, B.R., Atkins, J.D. & Roche, D.B. (2017) Accurate Template Based Modelling in CASP12 using the IntFOLD4-TS, ModFOLD6 and ReFOLD methods. Proteins: Structure, Function, and Bioinformatics, 86 Suppl 1, 335-344, doi: 10.1002/prot.25360. PubMed
Links to graphical output:
- Top 5 3D models
- Disorder prediction
- Domain boundary prediction
- Binding site prediction
- Full model quality assessment results
Download machine readable results in CASP format:
- TS (Tertiary Structure Prediction)
- DR (Disorder Prediction)
- DP (Domain Prediction)
- FN (Binding Site Prediction)
- QA (Model Quality Prediction)
- Make a compressed file containing all generated 3D models (models are in PDB format with predicted per-residue errors in the B-factor column)
Results will be available for 21 days after job completion (subject to server capacity)
Tertiary Structure Predictions: Top 5 multi-template 3D models for MAP4K4_351-494 | Help | ||||
Model ID and PDBsum links for all templates used | Confidence and P-value | Global model quality score | Local model quality plot (click images to download plots) | 3D map of model quality |
IntFOLD6 IT5 TS1 |
CERT: 1.026E-10 |
0.6171 |
|
|
IntFOLD6 MUSTER multi8 TS1 6f1tX |
CERT: 4.969E-10 |
0.6101 |
|
|
IntFOLD6 MUSTER multi6 TS1 6f1tX |
CERT: 4.969E-10 |
0.6101 |
|
|
IntFOLD6 MUSTER multi4 TS1 6f1tX |
CERT: 4.969E-10 |
0.6101 |
|
|
IntFOLD6 MUSTER multi2 TS1 6f1tX |
CERT: 4.969E-10 |
0.6101 |
|
McGuffin, L. J. (2008) Intrinsic disorder prediction from the analysis of multiple protein fold recognition models. Bioinformatics, 24, 1789-1804. PubMed
Disorder prediction for MAP4K4_351-494 | Help | |||
Click image to download plot in PostScript format. |
Domain boundary prediction for MAP4K4_351-494 | Help | |||
Click image to download model or view prediction using Jmol. The model above is coloured according to the predicted domains. |
Roche, D. B., Tetchner, S. J. & McGuffin, L. J. (2011) FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins. BMC Bioinformatics, 12, 160. PubMed
Ligand binding residues prediction for MAP4K4_351-494 | Help | |||
No binding residues predicted. |
Maghrabi, A.H.A. & McGuffin L.J. (2017) ModFOLD6: an accurate web server for the global and local quality estimation of 3D models of proteins. Nucleic Acids Res., 45, W416-W421, doi: 10.1093/nar/gkx332. PubMed
Full model quality assessment results for MAP4K4_351-494 | Help | ||||
Model ID and PDBsum links for all templates used | Confidence and P-value | Global model quality score | Local model quality plot (click images to download plots) | 3D map of model quality |
IntFOLD6 IT5 TS1 |
CERT: 1.026E-10 |
0.6171 |
|
|
IntFOLD6 MUSTER multi8 TS1 6f1tX |
CERT: 4.969E-10 |
0.6101 |
|
|
IntFOLD6 MUSTER multi6 TS1 6f1tX |
CERT: 4.969E-10 |
0.6101 |
|
|
IntFOLD6 MUSTER multi4 TS1 6f1tX |
CERT: 4.969E-10 |
0.6101 |
|
|
IntFOLD6 MUSTER multi2 TS1 6f1tX |
CERT: 4.969E-10 |
0.6101 |
|
|
IntFOLD6 LOMETS multi4 TS1 6f1tX |
CERT: 4.969E-10 |
0.6101 |
|
|
IntFOLD6 LOMETS multi2 TS1 6f1tX |
CERT: 4.969E-10 |
0.6101 |
|
|
IntFOLD6 SPARKSX multi7 TS1 2v71B |
CERT: 6.233E-10 |
0.6091 |
|
|
IntFOLD6 SPARKSX multi6 TS1 2v71B |
CERT: 6.233E-10 |
0.6091 |
|
|
IntFOLD6 IT5 TS3 |
CERT: 6.938E-10 |
0.6087 |
|
|
IntFOLD6 SPARKSX multi5 TS1 2v71B 2otoB |
CERT: 1.47E-9 |
0.6053 |
|
|
IntFOLD6 wPPAS multi8 TS1 6f1tX1 5hmoA |
CERT: 2.403E-9 |
0.6032 |
|
|
IntFOLD6 wPPAS multi5 TS1 6f1tX1 5hmoA |
CERT: 2.403E-9 |
0.6032 |
|
|
IntFOLD6 IT5 TS2 |
CERT: 2.783E-9 |
0.6025 |
|
|
IntFOLD6 IntFOLDTS60 multi1 TS1 6f1tX 2otoB |
CERT: 4.03E-9 |
0.6009 |
|
|
IntFOLD6 LOMETS multi1 TS1 6f1tX 5hmoA |
CERT: 4.691E-9 |
0.6002 |
|
|
IntFOLD6 wMUSTER multi5 TS1 6l5jA 5hmoA |
CERT: 7.253E-9 |
0.5983 |
|
|
IntFOLD6 IntFOLDTS60 multi3 TS1 6f1tX 2otoB 1gmjA 3k6tA 2pq4B 4wwrA 3tweA |
CERT: 8.232E-9 |
0.5978 |
|
|
IntFOLD6 SPARKSX multi8 TS1 2v71B 5tvbA 6uxvC |
CERT: 8.452E-9 |
0.5976 |
|
|
IntFOLD6 IntFOLDTS140 multi4 TS1 6f1tX1 6f1tX 6uxvC |
CERT: 1.202E-8 |
0.5961 |
|
|
IntFOLD6 wMUSTER multi8 TS1 6l5jA |
CERT: 1.343E-8 |
0.5956 |
|
|
IntFOLD6 wMUSTER multi6 TS1 6l5jA |
CERT: 1.343E-8 |
0.5956 |
|
|
IntFOLD6 DMPf TS3 |
CERT: 1.346E-8 |
0.5956 |
|
|
IntFOLD6 IntFOLDTS60 multi2 TS1 6f1tX |
CERT: 1.767E-8 |
0.5944 |
|
|
IntFOLD6 IntFOLDTS60 multi4 TS1 6f1tX 2v71B 5tvbA 6uxvC |
CERT: 2.251E-8 |
0.5933 |
|
|
IntFOLD6 wdPPAS multi5 TS1 6f1tX1 5hmoA |
CERT: 3.372E-8 |
0.5915 |
|
|
IntFOLD6 wMUSTER multi4 TS1 6f1tX |
CERT: 7.27E-8 |
0.5882 |
|
|
IntFOLD6 wMUSTER multi2 TS1 6f1tX |
CERT: 7.27E-8 |
0.5882 |
|
|
IntFOLD6 DMPf TS4 |
CERT: 7.61E-8 |
0.5880 |
|
|
IntFOLD6 wMUSTER multi1 TS1 6f1tX 6l5jA |
CERT: 1.161E-7 |
0.5861 |
|
|
IntFOLD6 IntFOLDTS140 multi2 TS1 6f1tX1 |
CERT: 1.172E-7 |
0.5861 |
|
|
IntFOLD6 IntFOLDTS140 multi1 TS1 6f1tX1 |
CERT: 1.172E-7 |
0.5861 |
|
|
IntFOLD6 dPPAS multi7 TS1 6f1tX1 |
CERT: 1.172E-7 |
0.5861 |
|
|
IntFOLD6 dPPAS multi6 TS1 6f1tX1 |
CERT: 1.172E-7 |
0.5861 |
|
|
IntFOLD6 dPPAS2 multi7 TS1 6f1tX1 |
CERT: 1.172E-7 |
0.5861 |
|
|
IntFOLD6 dPPAS2 multi6 TS1 6f1tX1 |
CERT: 1.172E-7 |
0.5861 |
|
|
IntFOLD6 IntFOLDTS140 multi3 TS1 6f1tX1 6obiA 1gmjA 3tweA 4wwrA 2pq4B |
CERT: 1.696E-7 |
0.5844 |
|
|
IntFOLD6 wPPAS multi6 TS1 6f1tX1 |
CERT: 2.736E-7 |
0.5823 |
|
|
IntFOLD6 dPPAS multi5 TS1 6f1tX1 5hmoA |
CERT: 6.474E-7 |
0.5785 |
|
|
IntFOLD6 wdPPAS multi6 TS1 6f1tX1 |
CERT: 1.243E-6 |
0.5757 |
|
|
IntFOLD6 wdPPAS multi7 TS1 6f1tX1 6obiA |
CERT: 1.403E-6 |
0.5751 |
|
|
IntFOLD6 PPAS multi6 TS1 6f1tX1 |
CERT: 1.416E-6 |
0.5751 |
|
|
IntFOLD6 dPPAS multi4 TS1 5hmoA 4mh6A |
CERT: 2.677E-6 |
0.5723 |
|
|
IntFOLD6 dPPAS multi1 TS1 5hmoA 4mh6A |
CERT: 2.677E-6 |
0.5723 |
|
|
IntFOLD6 dPPAS multi2 TS1 5hmoA |
CERT: 5.98E-6 |
0.5687 |
|
|
IntFOLD6 SPARKSX multi1 TS1 3k29A 6f1tX |
CERT: 9.074E-6 |
0.5669 |
|
|
IntFOLD6 SPARKSX multi2 TS1 3k29A |
CERT: 1.396E-5 |
0.5650 |
|
|
IntFOLD6 DMPf TS1 |
CERT: 2.062E-5 |
0.5633 |
|
|
IntFOLD6 dPPAS multi3 TS1 5hmoA 4mh6A 6f1tX1 |
CERT: 2.328E-5 |
0.5628 |
|
|
IntFOLD6 DMPf TS2 |
CERT: 2.493E-5 |
0.5625 |
|
|
IntFOLD6 dPPAS2 multi8 TS1 6f1tX1 4mh6A |
CERT: 5.825E-5 |
0.5587 |
|
|
IntFOLD6 dPPAS2 multi5 TS1 6f1tX1 4mh6A |
CERT: 5.825E-5 |
0.5587 |
|
|
IntFOLD6 MUSTER multi7 TS1 6f1tX 4mh6A |
CERT: 7.429E-5 |
0.5576 |
|
|
IntFOLD6 MUSTER multi3 TS1 6f1tX 4mh6A |
CERT: 7.429E-5 |
0.5576 |
|
|
IntFOLD6 MUSTER multi1 TS1 6f1tX 4mh6A |
CERT: 7.429E-5 |
0.5576 |
|
|
IntFOLD6 LOMETS multi3 TS1 6f1tX 4mh6A |
CERT: 7.429E-5 |
0.5576 |
|
|
IntFOLD6 PPAS multi4 TS1 4mh6A |
CERT: 1.34E-4 |
0.5550 |
|
|
IntFOLD6 PPAS multi3 TS1 4mh6A |
CERT: 1.34E-4 |
0.5550 |
|
|
IntFOLD6 PPAS multi2 TS1 4mh6A |
CERT: 1.34E-4 |
0.5550 |
|
|
IntFOLD6 wPPAS multi3 TS1 4mh6A |
CERT: 3.518E-4 |
0.5508 |
|
|
IntFOLD6 wPPAS multi2 TS1 4mh6A |
CERT: 3.518E-4 |
0.5508 |
|
|
IntFOLD6 COMA multi6 TS1 2zuoA |
CERT: 8.817E-4 |
0.5467 |
|
|
IntFOLD6 wPPAS multi1 TS1 4mh6A 5hmoA |
HIGH: 2.348E-3 |
0.5393 |
|
|
IntFOLD6 dPPAS multi8 TS1 6f1tX1 5hmoA 4mh6A |
HIGH: 3.82E-3 |
0.5352 |
|
|
IntFOLD6 SPARKSX multi3 TS1 3k29A 6f1tX 2otoB 2v71B |
HIGH: 4.229E-3 |
0.5343 |
|
|
IntFOLD6 spk2 multi8 TS1 4mh6A |
HIGH: 4.7E-3 |
0.5332 |
|
|
IntFOLD6 spk2 multi7 TS1 4mh6A |
HIGH: 4.7E-3 |
0.5332 |
|
|
IntFOLD6 spk2 multi6 TS1 4mh6A |
HIGH: 4.7E-3 |
0.5332 |
|
|
IntFOLD6 PPAS multi1 TS1 4mh6A 5hmoA |
HIGH: 5.47E-3 |
0.5317 |
|
|
IntFOLD6 MUSTER multi5 TS1 6f1tX 5c21A |
HIGH: 7.686E-3 |
0.5277 |
|
|
IntFOLD6 PPAS multi8 TS1 6f1tX1 4mh6A |
HIGH: 8.709E-3 |
0.5261 |
|
|
IntFOLD6 PPAS multi7 TS1 6f1tX1 4mh6A |
HIGH: 8.709E-3 |
0.5261 |
|
|
IntFOLD6 PPAS multi5 TS1 6f1tX1 4mh6A |
HIGH: 8.709E-3 |
0.5261 |
|
|
IntFOLD6 SPARKSX multi4 TS1 3k29A 6f1tX 5tvbA 6uxvC |
MEDIUM: 1.089E-2 |
0.5230 |
|
|
IntFOLD6 COMA multi7 TS1 2zuoA 2qagB |
MEDIUM: 1.264E-2 |
0.5208 |
|
|
IntFOLD6 spk2 multi5 TS1 4mh6A 3k29A |
MEDIUM: 1.386E-2 |
0.5193 |
|
|
IntFOLD6 wdPPAS multi1 TS1 6snyA 5hmoA |
MEDIUM: 2.21E-2 |
0.5107 |
|
|
IntFOLD6 wPPAS multi7 TS1 6f1tX1 5tvbA 4mh6A |
MEDIUM: 2.236E-2 |
0.5104 |
|
|
IntFOLD6 wdPPAS multi8 TS1 6f1tX1 5hmoA 4mh6A |
MEDIUM: 2.391E-2 |
0.5090 |
|
|
IntFOLD6 spk2 multi3 TS1 2nsaA 3k29A 4mh6A |
MEDIUM: 3.13E-2 |
0.5028 |
|
|
IntFOLD6 dPPAS2 multi1 TS1 6snyA 5hmoA |
MEDIUM: 4.396E-2 |
0.4938 |
|
|
IntFOLD6 wMUSTER multi7 TS1 6l5jA 4mh6A |
MEDIUM: 4.728E-2 |
0.4917 |
|
|
IntFOLD6 wPPAS multi4 TS1 4mh6A 4tqlA1 |
LOW: 5.198E-2 |
0.4888 |
|
|
IntFOLD6 wdPPAS multi2 TS1 6snyA |
LOW: 5.236E-2 |
0.4885 |
|
|
IntFOLD6 CNFsearch multi3 TS1 1jchA 5j1iA 6f1tX |
LOW: 5.419E-2 |
0.4874 |
|
|
IntFOLD6 CNFsearch multi7 TS1 1jchA 5j1iA 4l1bB |
LOW: 5.584E-2 |
0.4866 |
|
|
IntFOLD6 dPPAS2 multi2 TS1 6snyA |
LOW: 6.482E-2 |
0.4828 |
|
|
IntFOLD6 spk2 multi4 TS1 2nsaA |
LOW: 7.313E-2 |
0.4794 |
|
|
IntFOLD6 spk2 multi2 TS1 2nsaA |
LOW: 7.313E-2 |
0.4794 |
|
|
IntFOLD6 CNFsearch multi5 TS1 1jchA 6f1tX |
LOW: 7.519E-2 |
0.4786 |
|
|
IntFOLD6 CNFsearch multi8 TS1 1jchA |
LOW: 7.592E-2 |
0.4783 |
|
|
IntFOLD6 CNFsearch multi6 TS1 1jchA |
LOW: 7.592E-2 |
0.4783 |
|
|
IntFOLD6 CNFsearch multi4 TS1 1jchA |
LOW: 7.592E-2 |
0.4783 |
|
|
IntFOLD6 CNFsearch multi2 TS1 1jchA |
LOW: 7.592E-2 |
0.4783 |
|
|
IntFOLD6 wdPPAS multi4 TS1 6snyA 5hmoA 4mh6A |
UNCERT: 1.039E-1 |
0.4670 |
|
|
IntFOLD6 dPPAS2 multi4 TS1 6snyA 5hmoA 4mh6A |
UNCERT: 1.126E-1 |
0.4635 |
|
|
IntFOLD6 wMUSTER multi3 TS1 6f1tX 6l5jA 4mh6A |
UNCERT: 1.41E-1 |
0.4515 |
|
|
IntFOLD6 spk2 multi1 TS1 2nsaA 3k29A |
UNCERT: 1.597E-1 |
0.4436 |
|
|
IntFOLD6 wdPPAS multi3 TS1 6snyA 5hmoA 4mh6A 6f1tX1 6obiA |
UNCERT: 1.665E-1 |
0.4406 |
|
|
IntFOLD6 dPPAS2 multi3 TS1 6snyA 5hmoA 4mh6A 5wsuC |
UNCERT: 1.832E-1 |
0.4338 |
|
|
IntFOLD6 COMA multi4 TS1 2qagB 5c8jI 2zuoA 2qagC |
UNCERT: 2.112E-1 |
0.4232 |
|
|
IntFOLD6 COMA multi8 TS1 2zuoA 2qagC |
UNCERT: 2.193E-1 |
0.4204 |
|
|
IntFOLD6 COMA multi5 TS1 2zuoA 2qagC |
UNCERT: 2.193E-1 |
0.4204 |
|
|
IntFOLD6 CNFsearch multi1 TS1 1jchA 4uxvA |
UNCERT: 2.237E-1 |
0.4190 |
|
|
IntFOLD6 Env-PPAS multi6 TS1 4x6gA1 |
UNCERT: 2.715E-1 |
0.4048 |
|
|
IntFOLD6 HHpred TS3 3k6tA 1m0fB 2pq4B 3lcnC 1psbC 5firB |
UNCERT: 2.773E-1 |
0.4033 |
|
|
IntFOLD6 Env-PPAS multi5 TS1 4x6gA1 5z4yA |
UNCERT: 2.851E-1 |
0.4013 |
|
|
IntFOLD6 Env-PPAS multi7 TS1 4x6gA1 3whpA1 |
UNCERT: 2.959E-1 |
0.3987 |
|
|
IntFOLD6 HHpred TS2 3k6tA 1m0fB 2pq4B 3lcnC 1psbC 5firB |
UNCERT: 3.023E-1 |
0.3972 |
|
|
IntFOLD6 Env-PPAS multi3 TS1 5fo5A 4x6gA1 3whpA1 |
UNCERT: 3.034E-1 |
0.3969 |
|
|
IntFOLD6 Env-PPAS multi2 TS1 5fo5A |
UNCERT: 3.189E-1 |
0.3934 |
|
|
IntFOLD6 Env-PPAS multi1 TS1 5fo5A 5z4yA |
UNCERT: 3.218E-1 |
0.3927 |
|
|
IntFOLD6 HHsearch multi8 TS1 1gmjA 3htuB 4wwrA 3tweA 2pq4B 5firB |
UNCERT: 3.337E-1 |
0.3901 |
|
|
IntFOLD6 HHpred TS1 3k6tA 1m0fB 2pq4B 3lcnC 1psbC 5firB |
UNCERT: 3.439E-1 |
0.3880 |
|
|
IntFOLD6 HHsearch multi7 TS1 1gmjA 4wwrA 3tweA |
UNCERT: 3.798E-1 |
0.3808 |
|
|
IntFOLD6 HHsearch multi4 TS1 4dnnA 3tweA 3htuB 2xa6A 2pq4B 5firB |
UNCERT: 3.892E-1 |
0.3790 |
|
|
IntFOLD6 Env-PPAS multi8 TS1 4x6gA1 5fo5A 5y9sA1 5ze9A3 |
UNCERT: 4.141E-1 |
0.3745 |
|
|
IntFOLD6 Env-PPAS multi4 TS1 5fo5A 1inpA1 |
UNCERT: 4.751E-1 |
0.3638 |
|
|
IntFOLD6 HHsearch multi5 TS1 1gmjA 3htuB |
UNCERT: 5.256E-1 |
0.3554 |
|
|
IntFOLD6 COMA multi1 TS1 2qagB 5c8jI |
UNCERT: 5.431E-1 |
0.3526 |
|
|
IntFOLD6 HHsearch multi6 TS1 1gmjA |
UNCERT: 5.879E-1 |
0.3453 |
|
|
IntFOLD6 COMA multi3 TS1 2qagB |
UNCERT: 6.979E-1 |
0.3268 |
|
|
IntFOLD6 COMA multi2 TS1 2qagB |
UNCERT: 6.979E-1 |
0.3268 |
|
|
IntFOLD6 HHsearch multi3 TS1 4dnnA 3k6tA 4wwrA |
UNCERT: 7.491E-1 |
0.3174 |
|
|
IntFOLD6 sp3 multi6 TS1 6yxqA |
UNCERT: 7.609E-1 |
0.3152 |
|
|
IntFOLD6 sp3 multi4 TS1 6uieA |
UNCERT: 7.757E-1 |
0.3122 |
|
|
IntFOLD6 sp3 multi2 TS1 6uieA |
UNCERT: 7.757E-1 |
0.3122 |
|
|
IntFOLD6 HHsearch multi2 TS1 4dnnA |
UNCERT: 8.069E-1 |
0.3058 |
|
|
IntFOLD6 HHsearch multi1 TS1 4dnnA 3k6tA |
UNCERT: 8.084E-1 |
0.3054 |
|
|
IntFOLD6 sp3 multi8 TS1 6yxqA 6zkaZ |
UNCERT: 8.993E-1 |
0.2818 |
|
|
IntFOLD6 sp3 multi5 TS1 6yxqA 6v4mA |
UNCERT: 9.592E-1 |
0.2564 |
|
|
IntFOLD6 sp3 multi7 TS1 6yxqA 6v4mA 6zkaZ |
UNCERT: 9.636E-1 |
0.2537 |
|
|
IntFOLD6 sp3 multi3 TS1 6uieA 6zkaZ |
UNCERT: 9.829E-1 |
0.2388 |
|
|
IntFOLD6 sp3 multi1 TS1 6uieA 6zkaZ |
UNCERT: 9.829E-1 |
0.2388 |
|