Staff Profile:Dr Andrew Meade

Name:

Dr Andrew Meade

Job Title:

Academic, Philip Lyle Building

Responsibilities:

Areas of Interest:

Research interests

• Phylogentic inference

• Comparative methods

• Computational biology

• High performance computing

Research groups / Centres:

Evolutionary biology research

Publications:

Y

Jump to: 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003

Number of items: 22.

2010

• Venditti, C., Meade, A. and Pagel, M. (2010) Phylogenies reveal new interpretation of speciation and the Red Queen. Nature, 463 (7379). pp. 349-352. ISSN 0028-0836

2009

• Organ, C. L., Janes, D. E., Meade, A. and Pagel, M. (2009) Genotypic sex determination enabled adaptive radiations of extinct marine reptiles. Nature, 461 (7262). pp. 389-392. ISSN 0028-0836
• Johnson, D., Meade, A. and Alexandrov, V. N. (2009) A lightweight supercomputing web portal for inferring phylogenetic trees. In: 5th IEEE International Conference on e-Science Workshops , 2009, Oxford, UK.

2008

• Atkinson, Q. D., Meade, A., Venditti, C., Greenhill, S. J. and Pagel, M. (2008) Languages evolve in punctuational bursts. Science, 319 (5863). p. 588. ISSN 0036-8075
• Pagel, M. and Meade, A. (2008) Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo. Philosophical Transactions of the Royal Society B-Biological Sciences, 363 (1512). pp. 3955-3964. ISSN 0962-8436
• Atkinson, Q. D., Meade, A., Venditti, C., Greenhill, S. J. and Pagel, M. (2008) Parsing the evolution of language - Response. Science, 320 (5875). p. 446. ISSN 0036-8075
• Meade, A. and Pagel, M. (2008) A phylogenetic mixture model for heterotachy. In: Pontarotti, P. (ed.) Evolutionary Biology from Concept to Application. Springer Verlag, Heidelberg, 29-41 . ISBN 9783642009518
• Venditti, C., Meade, A. and Pagel, M. (2008) Phylogenetic mixture models can reduce node-density artifacts. Systematic Biology, 57 (2). pp. 286-293. ISSN 1063-5157

2007

• Pagel, M., Meade, A. and Scott, D. (2007) Assembly rules for protein networks derived from phylogenetic-statistical analysis of whole genomes. Bmc Evolutionary Biology, 7. p. 11. ISSN 1471-2148
• Barker, D., Meade, A. and Pagel, M. (2007) Constrained models of evolution lead to improved prediction of functional linkage from correlated gain and loss of genes. Bioinformatics, 23 (1). pp. 14-20. ISSN 1367-4803
• Pagel, M., Atkinson, Q. D. and Meade, A. (2007) Frequency of word-use predicts rates of lexical evolution throughout Indo-European history. Nature, 449 (7163). 717-U7. ISSN 0028-0836
• Organ, C. L., Shedlock, A. M., Meade, A., Pagel, M. and Edwards, S. V. (2007) Origin of avian genome size and structure in non-avian dinosaurs. Nature, 446 (7132). pp. 180-184. ISSN 0028-0836

2006

• Pagel, M. and Meade, A. (2006) Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo. American Naturalist, 167 (6). pp. 808-825. ISSN 0003-0147
• Venditti, C., Meade, A. and Pagel, M. (2006) Detecting the node-density artifact in phylogeny reconstruction. Systematic Biology, 55 (4). pp. 637-643. ISSN 1063-5157
• Pagel, M. and Meade, A. (2006) Estimating rates of lexical replacement on phylogenetic trees of languages. In: Forster, P. and Renfrew, C. (eds.) Phylogenetic methods and the prehistory of languages. McDonald institute Monographs, pp. 173-182. ISBN 9781902937335
• Pagel, M., Venditti, C. and Meade, A. (2006) Large punctuational contribution of speciation to evolutionary divergence at the molecular level. Science, 314 (5796). pp. 119-121. ISSN 0036-8075
• Lester, L., Meade, A. and Pagel, M. (2006) The slow road to the eukaryotic genome. Bioessays, 28 (1). pp. 57-64. ISSN 0265-9247

2005

• Pagel, M. and Meade, A. (2005) Bayesian estimation of correlated evolution across cultures: a case study of marriage systems and wealth transfer at marriage. In: Mace, R., Holden, C.J. and Shennan, S. (eds.) The Evolution of Cultural Diversity: a phylogenetic approach. University College London Press, London, pp. 235-256. ISBN 9781844720651
• Pagel, M. and Meade, A. (2005) Mixture models in phylogenetic inference. In: Gascuel, O. (ed.) Mathematics of Evolution and Phylogeny. Oxford University Press, pp. 121-142. ISBN 9780198566106

2004

• Pagel, M., Meade, A. and Barker, D. (2004) Bayesian estimation of ancestral character states on phylogenies. Systematic Biology, 53 (5). pp. 673-684. ISSN 1063-5157
• Pagel, M. and Meade, A. (2004) A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data. Systematic Biology, 53 (4). pp. 571-581. ISSN 1063-5157

2003

• Sibly, R. M., Meade, A., Boxall, N., Wilkinson, M. J., Corne, D. W. and Whittaker, J. C. (2003) The structure of interrupted human AC microsatellites. Molecular Biology and Evolution, 20 (3). pp. 453-459. ISSN 0737-4038

This list was generated on Wed Feb 8 02:38:46 2012 GMT.

 

Pre 2003

Meade, A.P, Corne, D.W., Sibly, R.M. 2002 Discovering Patterns in Microsatellite Flanks with Evolutionary Computation by Evolving Discriminatory DNA Motifs, Proceedings of the 2002 IEEE Congress on Evolutionary Computation, IEEE Press, ISBN 0-7803-7278-6, pp. 1-6, 2002.

Meade, A., Corne, D., Pagel, M., Sibly, R. Using Evolutionary Algorithms to Estimate Transition Rates of Discrete Characteristics in Phylogenetic Trees, in Proceedings of the 2001 Congress on Evolutionary Computation, IEEE Press, pp. 1170-1177, ISBN 0-7803-6657-3 Corne, D., Meade, A., & Sibly, R. 2001 Evolving Core Promoter Signal Motifs. Proceedings of the 2001 Congress on Evolutionary Computation, pp. 1162-1169, Seoul Korea.

Meade, A., Corne, D. and Sibly, R.M. 2000 Applying Evolutionary Computation to Understanding the Insertion Behaviour of LINE-1 Retrotransposons in Human DNA, in Proceedings of the 2000 Congress on Evolutionary Computation, IEEE Neural Networks Council, pp. 274-282. ISBN 0-7803-6375-2