#!/bin/bash
#You will need to edit these paths to match your installation - see README_ModFOLD
export PSIBLAST=/home/Liam/programs/blast-2.2.13/bin/blastpgp
export BLAST_DB=/home/Liam/data/blastdb/nrfilt
export HHSEARCH_HOME=/home/Liam/programs/bin/
export HHSEARCH_CAL=/home/Liam/data/hhsearch/cal.hhm
export HHSEARCH_DB=/home/Liam/data/hhsearch/hhsearch_db.hhm
export KEY_MODELLER9v5=XXXXXXXXX
export MODELLER=/usr/bin/mod9v5
export TMSCORE=/home/Liam/programs/bin/TMscore
export JAVA_HOME=/home/Liam/jdk1.5.0_06/
$JAVA_HOME/bin/java -jar ModFOLD.jar $1 $2 $3