#!/bin/bash
#You will need to edit these paths to match your installation - see README_FunFOLD
export PYMOL_HOME=/usr/bin/
export TMALIGN_HOME=/home/Liam/programs/bin/
export JAVA_HOME=/home/Liam/jdk1.5.0_06/
$JAVA_HOME/bin/java -jar FunFOLD.jar $1 $2 $3 $4