#!/bin/bash
#You will need to edit these paths to match your installation - see README_DISOclust
export PSIBLAST=/home/Liam/programs/blast-2.2.13/bin/blastpgp
export BLAST_DB=/home/Liam/data/blastdb/nrfilt
export HHSEARCH_HOME=/home/Liam/programs/bin/
export HHSEARCH_CAL=/home/Liam/data/hhsearch/cal.hhm
export HHSEARCH_DB=/home/Liam/data/hhsearch/hhsearch_db.hhm
export KEY_MODELLER9v4=XXXXXXXXXXX
export MODELLER=/usr/bin/mod9v4
export TMSCORE=/home/Liam/programs/bin/TMscore
export DISOPRED=/home/Liam/programs/disopred2/bin/disopred
export DISOPRED_DB=/home/Liam/programs/disopred2/data/
export JAVA_HOME=/home/Liam/jdk1.5.0_06/
$JAVA_HOME/bin/java -jar DISOclust.jar $1 $2 $3